Strain Fitness in Escherichia coli ECRC101 around MCAODC_24055

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntagp and MCAODC_24055 are separated by 290 nucleotidesMCAODC_24055 and MCAODC_24060 are separated by 109 nucleotides MCAODC_24050: agp - bifunctional glucose-1-phosphatase/inositol phosphatase, at 1,535,168 to 1,536,409 agp MCAODC_24055: MCAODC_24055 - YccE, at 1,536,700 to 1,536,948 _24055 MCAODC_24060: MCAODC_24060 - YccE, at 1,537,058 to 1,537,957 _24060 Position (kb) 1536 1537Strain fitness (log2 ratio) -3 -2 -1 0 1at 1535.714 kb on + strand, within agpat 1535.714 kb on + strand, within agpat 1535.714 kb on + strand, within agpat 1535.715 kb on - strand, within agpat 1535.767 kb on - strand, within agpat 1535.783 kb on - strand, within agpat 1535.783 kb on - strand, within agpat 1535.822 kb on - strand, within agpat 1535.841 kb on + strand, within agpat 1535.841 kb on + strand, within agpat 1535.842 kb on - strand, within agpat 1535.842 kb on - strand, within agpat 1535.861 kb on + strand, within agpat 1535.862 kb on - strand, within agpat 1535.878 kb on + strand, within agpat 1535.963 kb on - strand, within agpat 1535.977 kb on + strand, within agpat 1536.010 kb on + strand, within agpat 1536.011 kb on - strand, within agpat 1536.062 kb on - strand, within agpat 1536.081 kb on + strand, within agpat 1536.088 kb on - strand, within agpat 1536.123 kb on - strand, within agpat 1536.123 kb on - strand, within agpat 1536.123 kb on - strand, within agpat 1536.156 kb on + strand, within agpat 1536.156 kb on + strand, within agpat 1536.157 kb on - strand, within agpat 1536.168 kb on + strand, within agpat 1536.168 kb on + strand, within agpat 1536.168 kb on + strand, within agpat 1536.168 kb on + strand, within agpat 1536.168 kb on + strand, within agpat 1536.168 kb on + strand, within agpat 1536.169 kb on - strand, within agpat 1536.169 kb on - strand, within agpat 1536.169 kb on - strand, within agpat 1536.169 kb on - strand, within agpat 1536.169 kb on - strand, within agpat 1536.169 kb on - strand, within agpat 1536.180 kb on - strand, within agpat 1536.284 kb on + strand, within agpat 1536.285 kb on - strandat 1536.285 kb on - strandat 1536.285 kb on - strandat 1536.289 kb on + strandat 1536.371 kb on + strandat 1536.549 kb on + strandat 1536.550 kb on - strandat 1536.687 kb on + strandat 1536.702 kb on - strandat 1536.889 kb on - strand, within MCAODC_24055at 1537.030 kb on + strandat 1537.161 kb on - strand, within MCAODC_24060

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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1,535,714 + agp MCAODC_24050 0.44 -0.8
1,535,714 + agp MCAODC_24050 0.44 +0.1
1,535,714 + agp MCAODC_24050 0.44 +0.8
1,535,715 - agp MCAODC_24050 0.44 -2.3
1,535,767 - agp MCAODC_24050 0.48 +1.2
1,535,783 - agp MCAODC_24050 0.50 -0.3
1,535,783 - agp MCAODC_24050 0.50 +0.6
1,535,822 - agp MCAODC_24050 0.53 -0.5
1,535,841 + agp MCAODC_24050 0.54 +0.3
1,535,841 + agp MCAODC_24050 0.54 -1.1
1,535,842 - agp MCAODC_24050 0.54 -1.0
1,535,842 - agp MCAODC_24050 0.54 +0.4
1,535,861 + agp MCAODC_24050 0.56 -0.8
1,535,862 - agp MCAODC_24050 0.56 +0.5
1,535,878 + agp MCAODC_24050 0.57 -1.1
1,535,963 - agp MCAODC_24050 0.64 +0.4
1,535,977 + agp MCAODC_24050 0.65 +0.4
1,536,010 + agp MCAODC_24050 0.68 +0.3
1,536,011 - agp MCAODC_24050 0.68 +0.4
1,536,062 - agp MCAODC_24050 0.72 -3.2
1,536,081 + agp MCAODC_24050 0.74 -0.4
1,536,088 - agp MCAODC_24050 0.74 -2.3
1,536,123 - agp MCAODC_24050 0.77 +0.6
1,536,123 - agp MCAODC_24050 0.77 -0.4
1,536,123 - agp MCAODC_24050 0.77 -0.9
1,536,156 + agp MCAODC_24050 0.80 +0.8
1,536,156 + agp MCAODC_24050 0.80 -0.2
1,536,157 - agp MCAODC_24050 0.80 +0.3
1,536,168 + agp MCAODC_24050 0.81 -0.2
1,536,168 + agp MCAODC_24050 0.81 +1.6
1,536,168 + agp MCAODC_24050 0.81 +1.1
1,536,168 + agp MCAODC_24050 0.81 -1.2
1,536,168 + agp MCAODC_24050 0.81 +0.8
1,536,168 + agp MCAODC_24050 0.81 -0.2
1,536,169 - agp MCAODC_24050 0.81 -0.4
1,536,169 - agp MCAODC_24050 0.81 -1.1
1,536,169 - agp MCAODC_24050 0.81 +0.0
1,536,169 - agp MCAODC_24050 0.81 -0.1
1,536,169 - agp MCAODC_24050 0.81 -0.1
1,536,169 - agp MCAODC_24050 0.81 -0.3
1,536,180 - agp MCAODC_24050 0.81 -0.3
1,536,284 + agp MCAODC_24050 0.90 -0.2
1,536,285 - +0.1
1,536,285 - -0.7
1,536,285 - +0.7
1,536,289 + +1.7
1,536,371 + +0.3
1,536,549 + +1.1
1,536,550 - +1.1
1,536,687 + +0.4
1,536,702 - +1.7
1,536,889 - MCAODC_24055 0.76 -0.6
1,537,030 + -0.2
1,537,161 - MCAODC_24060 0.11 +0.5

Or see this region's nucleotide sequence