Strain Fitness in Escherichia coli ECRC101 around MCAODC_23830

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfabG and acpS2 are separated by 13 nucleotidesacpS2 and fhaC are separated by 15 nucleotidesfhaC and fhaB are separated by 88 nucleotides MCAODC_23820: fabG - 3-oxoacyl-ACP reductase, at 1,485,177 to 1,485,938 fabG MCAODC_23825: acpS2 - putative holo-[acyl-carrier-protein] synthase 2, at 1,485,952 to 1,486,320 acpS2 MCAODC_23830: fhaC - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 1,486,336 to 1,487,955 fhaC MCAODC_23835: fhaB - hemagglutinin, at 1,488,044 to 1,491,856 fhaB Position (kb) 1486 1487 1488Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1485.336 kb on + strand, within fabGat 1485.435 kb on + strand, within fabGat 1485.497 kb on + strand, within fabGat 1485.657 kb on - strand, within fabGat 1486.236 kb on - strand, within acpS2at 1486.506 kb on - strand, within fhaCat 1487.341 kb on - strand, within fhaCat 1487.341 kb on - strand, within fhaCat 1487.545 kb on + strand, within fhaCat 1487.581 kb on - strand, within fhaCat 1487.973 kb on + strandat 1488.016 kb on - strandat 1488.045 kb on + strandat 1488.045 kb on + strandat 1488.196 kb on - strandat 1488.298 kb on + strandat 1488.299 kb on - strandat 1488.299 kb on - strandat 1488.301 kb on + strandat 1488.319 kb on + strandat 1488.325 kb on - strandat 1488.325 kb on - strandat 1488.431 kb on - strand, within fhaBat 1488.495 kb on + strand, within fhaBat 1488.496 kb on - strand, within fhaBat 1488.496 kb on - strand, within fhaBat 1488.500 kb on - strand, within fhaBat 1488.563 kb on - strand, within fhaBat 1488.634 kb on - strand, within fhaBat 1488.645 kb on + strand, within fhaBat 1488.655 kb on - strand, within fhaBat 1488.742 kb on + strand, within fhaBat 1488.776 kb on - strand, within fhaBat 1488.784 kb on - strand, within fhaBat 1488.822 kb on - strand, within fhaBat 1488.920 kb on - strand, within fhaBat 1488.920 kb on - strand, within fhaB

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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1,485,336 + fabG MCAODC_23820 0.21 -2.6
1,485,435 + fabG MCAODC_23820 0.34 +1.3
1,485,497 + fabG MCAODC_23820 0.42 -0.5
1,485,657 - fabG MCAODC_23820 0.63 -0.0
1,486,236 - acpS2 MCAODC_23825 0.77 -3.5
1,486,506 - fhaC MCAODC_23830 0.10 +0.1
1,487,341 - fhaC MCAODC_23830 0.62 -0.7
1,487,341 - fhaC MCAODC_23830 0.62 -0.6
1,487,545 + fhaC MCAODC_23830 0.75 +0.3
1,487,581 - fhaC MCAODC_23830 0.77 +0.5
1,487,973 + +0.7
1,488,016 - +0.2
1,488,045 + -2.1
1,488,045 + +0.2
1,488,196 - +0.6
1,488,298 + -1.5
1,488,299 - -1.4
1,488,299 - +1.2
1,488,301 + +1.1
1,488,319 + -0.5
1,488,325 - -0.5
1,488,325 - +0.4
1,488,431 - fhaB MCAODC_23835 0.10 +0.1
1,488,495 + fhaB MCAODC_23835 0.12 -0.5
1,488,496 - fhaB MCAODC_23835 0.12 +0.4
1,488,496 - fhaB MCAODC_23835 0.12 +0.4
1,488,500 - fhaB MCAODC_23835 0.12 +0.5
1,488,563 - fhaB MCAODC_23835 0.14 -1.0
1,488,634 - fhaB MCAODC_23835 0.15 -2.2
1,488,645 + fhaB MCAODC_23835 0.16 +0.1
1,488,655 - fhaB MCAODC_23835 0.16 +0.5
1,488,742 + fhaB MCAODC_23835 0.18 -0.3
1,488,776 - fhaB MCAODC_23835 0.19 +2.1
1,488,784 - fhaB MCAODC_23835 0.19 -0.4
1,488,822 - fhaB MCAODC_23835 0.20 -0.9
1,488,920 - fhaB MCAODC_23835 0.23 +0.4
1,488,920 - fhaB MCAODC_23835 0.23 +0.7

Or see this region's nucleotide sequence