Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fabG and acpS2 are separated by 13 nucleotides acpS2 and fhaC are separated by 15 nucleotides fhaC and fhaB are separated by 88 nucleotides
MCAODC_23820: fabG - 3-oxoacyl-ACP reductase, at 1,485,177 to 1,485,938
fabG
MCAODC_23825: acpS2 - putative holo-[acyl-carrier-protein] synthase 2, at 1,485,952 to 1,486,320
acpS2
MCAODC_23830: fhaC - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 1,486,336 to 1,487,955
fhaC
MCAODC_23835: fhaB - hemagglutinin, at 1,488,044 to 1,491,856
fhaB
Position (kb)
1486
1487
1488 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1485.336 kb on + strand, within fabG at 1485.435 kb on + strand, within fabG at 1485.497 kb on + strand, within fabG at 1485.657 kb on - strand, within fabG at 1486.236 kb on - strand, within acpS2 at 1486.506 kb on - strand, within fhaC at 1487.341 kb on - strand, within fhaC at 1487.341 kb on - strand, within fhaC at 1487.545 kb on + strand, within fhaC at 1487.581 kb on - strand, within fhaC at 1487.973 kb on + strand at 1488.016 kb on - strand at 1488.045 kb on + strand at 1488.045 kb on + strand at 1488.196 kb on - strand at 1488.298 kb on + strand at 1488.299 kb on - strand at 1488.299 kb on - strand at 1488.301 kb on + strand at 1488.319 kb on + strand at 1488.325 kb on - strand at 1488.325 kb on - strand at 1488.431 kb on - strand, within fhaB at 1488.495 kb on + strand, within fhaB at 1488.496 kb on - strand, within fhaB at 1488.496 kb on - strand, within fhaB at 1488.500 kb on - strand, within fhaB at 1488.563 kb on - strand, within fhaB at 1488.634 kb on - strand, within fhaB at 1488.645 kb on + strand, within fhaB at 1488.655 kb on - strand, within fhaB at 1488.742 kb on + strand, within fhaB at 1488.776 kb on - strand, within fhaB at 1488.784 kb on - strand, within fhaB at 1488.822 kb on - strand, within fhaB at 1488.920 kb on - strand, within fhaB at 1488.920 kb on - strand, within fhaB
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 1,485,336 + fabG MCAODC_23820 0.21 -2.6 1,485,435 + fabG MCAODC_23820 0.34 +1.3 1,485,497 + fabG MCAODC_23820 0.42 -0.5 1,485,657 - fabG MCAODC_23820 0.63 -0.0 1,486,236 - acpS2 MCAODC_23825 0.77 -3.5 1,486,506 - fhaC MCAODC_23830 0.10 +0.1 1,487,341 - fhaC MCAODC_23830 0.62 -0.7 1,487,341 - fhaC MCAODC_23830 0.62 -0.6 1,487,545 + fhaC MCAODC_23830 0.75 +0.3 1,487,581 - fhaC MCAODC_23830 0.77 +0.5 1,487,973 + +0.7 1,488,016 - +0.2 1,488,045 + -2.1 1,488,045 + +0.2 1,488,196 - +0.6 1,488,298 + -1.5 1,488,299 - -1.4 1,488,299 - +1.2 1,488,301 + +1.1 1,488,319 + -0.5 1,488,325 - -0.5 1,488,325 - +0.4 1,488,431 - fhaB MCAODC_23835 0.10 +0.1 1,488,495 + fhaB MCAODC_23835 0.12 -0.5 1,488,496 - fhaB MCAODC_23835 0.12 +0.4 1,488,496 - fhaB MCAODC_23835 0.12 +0.4 1,488,500 - fhaB MCAODC_23835 0.12 +0.5 1,488,563 - fhaB MCAODC_23835 0.14 -1.0 1,488,634 - fhaB MCAODC_23835 0.15 -2.2 1,488,645 + fhaB MCAODC_23835 0.16 +0.1 1,488,655 - fhaB MCAODC_23835 0.16 +0.5 1,488,742 + fhaB MCAODC_23835 0.18 -0.3 1,488,776 - fhaB MCAODC_23835 0.19 +2.1 1,488,784 - fhaB MCAODC_23835 0.19 -0.4 1,488,822 - fhaB MCAODC_23835 0.20 -0.9 1,488,920 - fhaB MCAODC_23835 0.23 +0.4 1,488,920 - fhaB MCAODC_23835 0.23 +0.7
Or see this region's nucleotide sequence