Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_23745 and fimB are separated by 186 nucleotides fimB and ycdU are separated by 366 nucleotides
MCAODC_23745: MCAODC_23745 - Membrane protein, at 1,467,954 to 1,469,771
_23745
MCAODC_23750: fimB - integrase, at 1,469,958 to 1,471,160
fimB
MCAODC_23755: ycdU - Uncharacterized protein YcdU, at 1,471,527 to 1,472,513
ycdU
Position (kb) 1469
1470
1471
1472 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1468.971 kb on + strand, within MCAODC_23745 at 1469.532 kb on - strand, within MCAODC_23745 at 1469.959 kb on + strand at 1470.012 kb on + strand at 1470.072 kb on - strand at 1470.120 kb on - strand, within fimB at 1470.197 kb on + strand, within fimB at 1470.282 kb on + strand, within fimB at 1470.360 kb on + strand, within fimB at 1470.362 kb on + strand, within fimB at 1470.435 kb on - strand, within fimB at 1470.435 kb on - strand, within fimB at 1470.450 kb on + strand, within fimB at 1470.450 kb on + strand, within fimB at 1470.470 kb on + strand, within fimB at 1470.470 kb on + strand, within fimB at 1470.470 kb on + strand, within fimB at 1470.470 kb on + strand, within fimB at 1470.471 kb on - strand, within fimB at 1470.471 kb on - strand, within fimB at 1470.471 kb on - strand, within fimB at 1470.471 kb on - strand, within fimB at 1470.471 kb on - strand, within fimB at 1470.471 kb on - strand, within fimB at 1470.473 kb on - strand, within fimB at 1470.486 kb on - strand, within fimB at 1470.487 kb on + strand, within fimB at 1470.487 kb on + strand, within fimB at 1470.488 kb on - strand, within fimB at 1470.636 kb on - strand, within fimB at 1470.766 kb on + strand, within fimB at 1470.795 kb on + strand, within fimB at 1470.795 kb on + strand, within fimB at 1470.795 kb on + strand, within fimB at 1470.795 kb on + strand, within fimB at 1470.796 kb on - strand, within fimB at 1470.796 kb on - strand, within fimB at 1470.796 kb on - strand, within fimB at 1470.796 kb on - strand, within fimB at 1470.838 kb on - strand, within fimB at 1470.838 kb on - strand, within fimB at 1470.838 kb on - strand, within fimB at 1470.950 kb on + strand, within fimB at 1470.951 kb on - strand, within fimB at 1471.001 kb on + strand, within fimB at 1471.001 kb on + strand, within fimB at 1471.001 kb on + strand, within fimB at 1471.001 kb on + strand, within fimB at 1471.002 kb on - strand, within fimB at 1471.027 kb on - strand, within fimB at 1471.027 kb on - strand, within fimB at 1471.031 kb on - strand, within fimB at 1471.128 kb on - strand at 1471.203 kb on + strand at 1471.494 kb on - strand at 1471.494 kb on - strand at 1471.496 kb on - strand at 1471.496 kb on - strand at 1471.575 kb on - strand at 1471.630 kb on - strand, within ycdU at 1471.634 kb on - strand, within ycdU at 1471.738 kb on - strand, within ycdU at 1472.154 kb on + strand, within ycdU
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 1,468,971 + MCAODC_23745 0.56 -1.4 1,469,532 - MCAODC_23745 0.87 +0.1 1,469,959 + -0.7 1,470,012 + +1.8 1,470,072 - +1.1 1,470,120 - fimB MCAODC_23750 0.13 +0.2 1,470,197 + fimB MCAODC_23750 0.20 -0.9 1,470,282 + fimB MCAODC_23750 0.27 +1.4 1,470,360 + fimB MCAODC_23750 0.33 +0.1 1,470,362 + fimB MCAODC_23750 0.34 -0.5 1,470,435 - fimB MCAODC_23750 0.40 +0.4 1,470,435 - fimB MCAODC_23750 0.40 +0.6 1,470,450 + fimB MCAODC_23750 0.41 -0.7 1,470,450 + fimB MCAODC_23750 0.41 +0.2 1,470,470 + fimB MCAODC_23750 0.43 -1.3 1,470,470 + fimB MCAODC_23750 0.43 +0.1 1,470,470 + fimB MCAODC_23750 0.43 +0.6 1,470,470 + fimB MCAODC_23750 0.43 +1.2 1,470,471 - fimB MCAODC_23750 0.43 -0.2 1,470,471 - fimB MCAODC_23750 0.43 -0.1 1,470,471 - fimB MCAODC_23750 0.43 +0.6 1,470,471 - fimB MCAODC_23750 0.43 +0.7 1,470,471 - fimB MCAODC_23750 0.43 -0.1 1,470,471 - fimB MCAODC_23750 0.43 -0.4 1,470,473 - fimB MCAODC_23750 0.43 +0.5 1,470,486 - fimB MCAODC_23750 0.44 +1.0 1,470,487 + fimB MCAODC_23750 0.44 +0.1 1,470,487 + fimB MCAODC_23750 0.44 -1.7 1,470,488 - fimB MCAODC_23750 0.44 +0.0 1,470,636 - fimB MCAODC_23750 0.56 -2.5 1,470,766 + fimB MCAODC_23750 0.67 -0.9 1,470,795 + fimB MCAODC_23750 0.70 +1.0 1,470,795 + fimB MCAODC_23750 0.70 +0.9 1,470,795 + fimB MCAODC_23750 0.70 +0.1 1,470,795 + fimB MCAODC_23750 0.70 -2.6 1,470,796 - fimB MCAODC_23750 0.70 -1.0 1,470,796 - fimB MCAODC_23750 0.70 +1.0 1,470,796 - fimB MCAODC_23750 0.70 +0.3 1,470,796 - fimB MCAODC_23750 0.70 -0.6 1,470,838 - fimB MCAODC_23750 0.73 +0.6 1,470,838 - fimB MCAODC_23750 0.73 -2.0 1,470,838 - fimB MCAODC_23750 0.73 -0.7 1,470,950 + fimB MCAODC_23750 0.82 +0.4 1,470,951 - fimB MCAODC_23750 0.83 -0.9 1,471,001 + fimB MCAODC_23750 0.87 +1.6 1,471,001 + fimB MCAODC_23750 0.87 -1.2 1,471,001 + fimB MCAODC_23750 0.87 +0.6 1,471,001 + fimB MCAODC_23750 0.87 -0.4 1,471,002 - fimB MCAODC_23750 0.87 -0.5 1,471,027 - fimB MCAODC_23750 0.89 -0.0 1,471,027 - fimB MCAODC_23750 0.89 -0.3 1,471,031 - fimB MCAODC_23750 0.89 +0.0 1,471,128 - +0.6 1,471,203 + -1.8 1,471,494 - -1.7 1,471,494 - +0.8 1,471,496 - +0.6 1,471,496 - +0.3 1,471,575 - -0.2 1,471,630 - ycdU MCAODC_23755 0.10 +1.0 1,471,634 - ycdU MCAODC_23755 0.11 -0.6 1,471,738 - ycdU MCAODC_23755 0.21 -0.2 1,472,154 + ycdU MCAODC_23755 0.64 +0.8
Or see this region's nucleotide sequence