Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_23705 and MCAODC_23710 are separated by 325 nucleotides MCAODC_23710 and MCAODC_23715 are separated by 161 nucleotides MCAODC_23715 and MCAODC_23720 are separated by 154 nucleotides MCAODC_23720 and tnp-IS3 are separated by 60 nucleotides
MCAODC_23705: MCAODC_23705 - IS66-like element ISEc8 family transposase, at 1,457,011 to 1,458,549
_23705
MCAODC_23710: MCAODC_23710 - hypothetical protein, at 1,458,875 to 1,459,144
_23710
MCAODC_23715: MCAODC_23715 - DEAD/DEAH box helicase, at 1,459,306 to 1,461,666
_23715
MCAODC_23720: MCAODC_23720 - Inovirus Gp2 family protein, at 1,461,821 to 1,462,348
_23720
MCAODC_23725: tnp-IS3 - IS3 family transposase, at 1,462,409 to 1,462,735
tnp-IS3
Position (kb)
1459
1460
1461
1462 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1458.843 kb on - strand at 1458.844 kb on + strand at 1458.845 kb on - strand at 1458.908 kb on + strand, within MCAODC_23710 at 1458.944 kb on - strand, within MCAODC_23710 at 1458.968 kb on - strand, within MCAODC_23710 at 1458.968 kb on - strand, within MCAODC_23710 at 1459.104 kb on - strand, within MCAODC_23710 at 1459.122 kb on + strand at 1459.143 kb on - strand at 1459.151 kb on - strand at 1459.210 kb on - strand at 1459.216 kb on + strand at 1459.231 kb on + strand at 1459.334 kb on - strand at 1459.358 kb on + strand at 1459.401 kb on - strand at 1459.473 kb on - strand at 1459.480 kb on + strand at 1459.481 kb on - strand at 1459.481 kb on - strand at 1459.481 kb on - strand at 1459.696 kb on + strand, within MCAODC_23715 at 1459.717 kb on - strand, within MCAODC_23715 at 1459.717 kb on - strand, within MCAODC_23715 at 1459.920 kb on + strand, within MCAODC_23715 at 1459.921 kb on - strand, within MCAODC_23715 at 1459.940 kb on + strand, within MCAODC_23715 at 1459.941 kb on - strand, within MCAODC_23715 at 1459.941 kb on - strand, within MCAODC_23715 at 1459.941 kb on - strand, within MCAODC_23715 at 1459.941 kb on - strand, within MCAODC_23715 at 1460.053 kb on - strand, within MCAODC_23715 at 1460.053 kb on - strand, within MCAODC_23715 at 1460.164 kb on - strand, within MCAODC_23715 at 1460.164 kb on - strand, within MCAODC_23715 at 1460.164 kb on - strand, within MCAODC_23715 at 1460.169 kb on + strand, within MCAODC_23715 at 1460.185 kb on - strand, within MCAODC_23715 at 1460.185 kb on - strand, within MCAODC_23715 at 1460.190 kb on + strand, within MCAODC_23715 at 1460.307 kb on + strand, within MCAODC_23715 at 1460.308 kb on - strand, within MCAODC_23715 at 1460.317 kb on - strand, within MCAODC_23715 at 1460.418 kb on + strand, within MCAODC_23715 at 1460.485 kb on + strand, within MCAODC_23715 at 1460.486 kb on - strand, within MCAODC_23715 at 1460.548 kb on + strand, within MCAODC_23715 at 1460.549 kb on - strand, within MCAODC_23715 at 1460.550 kb on + strand, within MCAODC_23715 at 1460.578 kb on - strand, within MCAODC_23715 at 1460.578 kb on - strand, within MCAODC_23715 at 1460.578 kb on - strand, within MCAODC_23715 at 1460.578 kb on - strand, within MCAODC_23715 at 1460.578 kb on - strand, within MCAODC_23715 at 1460.578 kb on - strand, within MCAODC_23715 at 1460.578 kb on - strand, within MCAODC_23715 at 1460.676 kb on - strand, within MCAODC_23715 at 1460.722 kb on - strand, within MCAODC_23715 at 1460.764 kb on - strand, within MCAODC_23715 at 1460.764 kb on - strand, within MCAODC_23715 at 1460.808 kb on + strand, within MCAODC_23715 at 1460.827 kb on + strand, within MCAODC_23715 at 1460.870 kb on - strand, within MCAODC_23715 at 1460.960 kb on - strand, within MCAODC_23715 at 1460.960 kb on - strand, within MCAODC_23715 at 1460.965 kb on + strand, within MCAODC_23715 at 1460.966 kb on - strand, within MCAODC_23715 at 1460.997 kb on + strand, within MCAODC_23715 at 1461.023 kb on + strand, within MCAODC_23715 at 1461.060 kb on + strand, within MCAODC_23715 at 1461.060 kb on + strand, within MCAODC_23715 at 1461.061 kb on - strand, within MCAODC_23715 at 1461.061 kb on - strand, within MCAODC_23715 at 1461.061 kb on - strand, within MCAODC_23715 at 1461.061 kb on - strand, within MCAODC_23715 at 1461.061 kb on - strand, within MCAODC_23715 at 1461.062 kb on + strand, within MCAODC_23715 at 1461.062 kb on + strand, within MCAODC_23715 at 1461.063 kb on - strand, within MCAODC_23715 at 1461.063 kb on - strand, within MCAODC_23715 at 1461.066 kb on + strand, within MCAODC_23715 at 1461.067 kb on - strand, within MCAODC_23715 at 1461.067 kb on - strand, within MCAODC_23715 at 1461.067 kb on - strand, within MCAODC_23715 at 1461.067 kb on - strand, within MCAODC_23715 at 1461.070 kb on - strand, within MCAODC_23715 at 1461.176 kb on - strand, within MCAODC_23715 at 1461.284 kb on + strand, within MCAODC_23715 at 1461.285 kb on - strand, within MCAODC_23715 at 1461.285 kb on - strand, within MCAODC_23715 at 1461.298 kb on - strand, within MCAODC_23715 at 1461.320 kb on + strand, within MCAODC_23715 at 1461.321 kb on - strand, within MCAODC_23715 at 1461.321 kb on - strand, within MCAODC_23715 at 1461.321 kb on - strand, within MCAODC_23715 at 1461.394 kb on + strand, within MCAODC_23715 at 1461.432 kb on - strand at 1461.465 kb on + strand at 1461.465 kb on + strand at 1461.465 kb on + strand at 1461.466 kb on - strand at 1461.475 kb on + strand at 1461.536 kb on - strand at 1461.598 kb on + strand at 1461.598 kb on + strand at 1461.598 kb on + strand at 1461.599 kb on - strand at 1461.638 kb on - strand at 1461.722 kb on - strand at 1461.759 kb on + strand at 1461.759 kb on + strand at 1461.794 kb on - strand at 1461.799 kb on + strand at 1461.803 kb on - strand at 1461.807 kb on - strand at 1461.809 kb on + strand at 1461.810 kb on - strand at 1461.810 kb on - strand at 1461.810 kb on - strand at 1461.818 kb on - strand at 1461.826 kb on + strand at 1461.827 kb on - strand at 1461.827 kb on - strand at 1461.827 kb on - strand at 1461.881 kb on - strand, within MCAODC_23720 at 1461.884 kb on - strand, within MCAODC_23720 at 1461.884 kb on - strand, within MCAODC_23720 at 1461.912 kb on - strand, within MCAODC_23720 at 1461.915 kb on + strand, within MCAODC_23720 at 1461.916 kb on - strand, within MCAODC_23720 at 1461.916 kb on - strand, within MCAODC_23720 at 1461.916 kb on - strand, within MCAODC_23720 at 1461.920 kb on - strand, within MCAODC_23720 at 1461.932 kb on + strand, within MCAODC_23720 at 1461.932 kb on + strand, within MCAODC_23720 at 1461.932 kb on + strand, within MCAODC_23720 at 1461.933 kb on - strand, within MCAODC_23720 at 1461.933 kb on - strand, within MCAODC_23720 at 1461.933 kb on - strand, within MCAODC_23720 at 1461.953 kb on - strand, within MCAODC_23720 at 1461.958 kb on + strand, within MCAODC_23720 at 1461.961 kb on - strand, within MCAODC_23720 at 1462.001 kb on - strand, within MCAODC_23720 at 1462.145 kb on + strand, within MCAODC_23720 at 1462.145 kb on - strand, within MCAODC_23720 at 1462.145 kb on - strand, within MCAODC_23720 at 1462.145 kb on - strand, within MCAODC_23720 at 1462.146 kb on + strand, within MCAODC_23720 at 1462.146 kb on + strand, within MCAODC_23720 at 1462.147 kb on - strand, within MCAODC_23720 at 1462.147 kb on - strand, within MCAODC_23720 at 1462.161 kb on + strand, within MCAODC_23720 at 1462.193 kb on - strand, within MCAODC_23720 at 1462.196 kb on + strand, within MCAODC_23720 at 1462.196 kb on + strand, within MCAODC_23720 at 1462.197 kb on - strand, within MCAODC_23720 at 1462.219 kb on + strand, within MCAODC_23720 at 1462.219 kb on + strand, within MCAODC_23720 at 1462.219 kb on + strand, within MCAODC_23720 at 1462.219 kb on + strand, within MCAODC_23720 at 1462.220 kb on - strand, within MCAODC_23720 at 1462.228 kb on + strand, within MCAODC_23720 at 1462.228 kb on + strand, within MCAODC_23720 at 1462.295 kb on - strand, within MCAODC_23720
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 1,458,843 - +2.8 1,458,844 + +0.9 1,458,845 - +0.7 1,458,908 + MCAODC_23710 0.12 -0.1 1,458,944 - MCAODC_23710 0.26 +1.9 1,458,968 - MCAODC_23710 0.34 -0.8 1,458,968 - MCAODC_23710 0.34 -0.5 1,459,104 - MCAODC_23710 0.85 +0.9 1,459,122 + +0.6 1,459,143 - -1.0 1,459,151 - -0.4 1,459,210 - +0.8 1,459,216 + +0.9 1,459,231 + +0.4 1,459,334 - +0.8 1,459,358 + +0.6 1,459,401 - -1.4 1,459,473 - +0.6 1,459,480 + -0.8 1,459,481 - +1.4 1,459,481 - -1.2 1,459,481 - +0.5 1,459,696 + MCAODC_23715 0.17 -0.4 1,459,717 - MCAODC_23715 0.17 -0.8 1,459,717 - MCAODC_23715 0.17 +1.2 1,459,920 + MCAODC_23715 0.26 +0.4 1,459,921 - MCAODC_23715 0.26 +0.1 1,459,940 + MCAODC_23715 0.27 +1.4 1,459,941 - MCAODC_23715 0.27 -2.1 1,459,941 - MCAODC_23715 0.27 +0.2 1,459,941 - MCAODC_23715 0.27 +0.4 1,459,941 - MCAODC_23715 0.27 +0.7 1,460,053 - MCAODC_23715 0.32 -0.9 1,460,053 - MCAODC_23715 0.32 +0.0 1,460,164 - MCAODC_23715 0.36 -1.4 1,460,164 - MCAODC_23715 0.36 +2.1 1,460,164 - MCAODC_23715 0.36 +1.7 1,460,169 + MCAODC_23715 0.37 -0.0 1,460,185 - MCAODC_23715 0.37 +1.7 1,460,185 - MCAODC_23715 0.37 +0.0 1,460,190 + MCAODC_23715 0.37 -0.9 1,460,307 + MCAODC_23715 0.42 +1.1 1,460,308 - MCAODC_23715 0.42 +1.3 1,460,317 - MCAODC_23715 0.43 -1.7 1,460,418 + MCAODC_23715 0.47 +0.6 1,460,485 + MCAODC_23715 0.50 +1.0 1,460,486 - MCAODC_23715 0.50 +0.0 1,460,548 + MCAODC_23715 0.53 -0.1 1,460,549 - MCAODC_23715 0.53 -0.9 1,460,550 + MCAODC_23715 0.53 -0.7 1,460,578 - MCAODC_23715 0.54 +1.2 1,460,578 - MCAODC_23715 0.54 +0.1 1,460,578 - MCAODC_23715 0.54 +0.4 1,460,578 - MCAODC_23715 0.54 -0.2 1,460,578 - MCAODC_23715 0.54 +0.6 1,460,578 - MCAODC_23715 0.54 -0.8 1,460,578 - MCAODC_23715 0.54 -0.4 1,460,676 - MCAODC_23715 0.58 +0.1 1,460,722 - MCAODC_23715 0.60 +1.5 1,460,764 - MCAODC_23715 0.62 -0.5 1,460,764 - MCAODC_23715 0.62 +0.2 1,460,808 + MCAODC_23715 0.64 -0.0 1,460,827 + MCAODC_23715 0.64 -1.0 1,460,870 - MCAODC_23715 0.66 +1.7 1,460,960 - MCAODC_23715 0.70 +0.9 1,460,960 - MCAODC_23715 0.70 -0.1 1,460,965 + MCAODC_23715 0.70 -0.0 1,460,966 - MCAODC_23715 0.70 +0.0 1,460,997 + MCAODC_23715 0.72 -0.1 1,461,023 + MCAODC_23715 0.73 -0.1 1,461,060 + MCAODC_23715 0.74 +0.5 1,461,060 + MCAODC_23715 0.74 +0.1 1,461,061 - MCAODC_23715 0.74 -0.2 1,461,061 - MCAODC_23715 0.74 -0.0 1,461,061 - MCAODC_23715 0.74 -0.6 1,461,061 - MCAODC_23715 0.74 -1.3 1,461,061 - MCAODC_23715 0.74 +0.7 1,461,062 + MCAODC_23715 0.74 +0.7 1,461,062 + MCAODC_23715 0.74 -0.8 1,461,063 - MCAODC_23715 0.74 -0.4 1,461,063 - MCAODC_23715 0.74 -0.6 1,461,066 + MCAODC_23715 0.75 +1.6 1,461,067 - MCAODC_23715 0.75 +1.9 1,461,067 - MCAODC_23715 0.75 +0.4 1,461,067 - MCAODC_23715 0.75 -0.3 1,461,067 - MCAODC_23715 0.75 +1.2 1,461,070 - MCAODC_23715 0.75 +1.3 1,461,176 - MCAODC_23715 0.79 -0.6 1,461,284 + MCAODC_23715 0.84 +1.0 1,461,285 - MCAODC_23715 0.84 +0.3 1,461,285 - MCAODC_23715 0.84 +0.4 1,461,298 - MCAODC_23715 0.84 +0.8 1,461,320 + MCAODC_23715 0.85 -0.0 1,461,321 - MCAODC_23715 0.85 +0.4 1,461,321 - MCAODC_23715 0.85 +0.2 1,461,321 - MCAODC_23715 0.85 -0.1 1,461,394 + MCAODC_23715 0.88 +1.1 1,461,432 - +0.1 1,461,465 + +0.7 1,461,465 + +4.0 1,461,465 + +0.6 1,461,466 - +0.1 1,461,475 + +1.0 1,461,536 - +1.2 1,461,598 + +0.9 1,461,598 + -2.9 1,461,598 + +0.3 1,461,599 - -0.8 1,461,638 - +0.5 1,461,722 - +0.3 1,461,759 + -0.3 1,461,759 + -0.1 1,461,794 - -0.4 1,461,799 + +0.5 1,461,803 - -0.5 1,461,807 - -2.2 1,461,809 + -1.1 1,461,810 - +1.3 1,461,810 - -0.0 1,461,810 - +0.5 1,461,818 - +0.1 1,461,826 + -1.5 1,461,827 - -0.3 1,461,827 - -0.1 1,461,827 - +0.6 1,461,881 - MCAODC_23720 0.11 -0.5 1,461,884 - MCAODC_23720 0.12 +0.5 1,461,884 - MCAODC_23720 0.12 +0.2 1,461,912 - MCAODC_23720 0.17 -0.2 1,461,915 + MCAODC_23720 0.18 +0.1 1,461,916 - MCAODC_23720 0.18 +0.0 1,461,916 - MCAODC_23720 0.18 -2.9 1,461,916 - MCAODC_23720 0.18 -0.1 1,461,920 - MCAODC_23720 0.19 +0.0 1,461,932 + MCAODC_23720 0.21 -0.1 1,461,932 + MCAODC_23720 0.21 -1.9 1,461,932 + MCAODC_23720 0.21 -1.5 1,461,933 - MCAODC_23720 0.21 -1.4 1,461,933 - MCAODC_23720 0.21 +1.3 1,461,933 - MCAODC_23720 0.21 +0.3 1,461,953 - MCAODC_23720 0.25 +0.4 1,461,958 + MCAODC_23720 0.26 -1.6 1,461,961 - MCAODC_23720 0.27 -1.0 1,462,001 - MCAODC_23720 0.34 -0.3 1,462,145 + MCAODC_23720 0.61 -0.2 1,462,145 - MCAODC_23720 0.61 +0.5 1,462,145 - MCAODC_23720 0.61 +0.8 1,462,145 - MCAODC_23720 0.61 -0.3 1,462,146 + MCAODC_23720 0.62 -0.7 1,462,146 + MCAODC_23720 0.62 +0.2 1,462,147 - MCAODC_23720 0.62 -0.7 1,462,147 - MCAODC_23720 0.62 +0.9 1,462,161 + MCAODC_23720 0.64 +0.9 1,462,193 - MCAODC_23720 0.70 -0.5 1,462,196 + MCAODC_23720 0.71 +0.7 1,462,196 + MCAODC_23720 0.71 +0.3 1,462,197 - MCAODC_23720 0.71 -0.1 1,462,219 + MCAODC_23720 0.75 -0.4 1,462,219 + MCAODC_23720 0.75 +0.1 1,462,219 + MCAODC_23720 0.75 -0.9 1,462,219 + MCAODC_23720 0.75 +0.5 1,462,220 - MCAODC_23720 0.76 +0.6 1,462,228 + MCAODC_23720 0.77 -1.3 1,462,228 + MCAODC_23720 0.77 -0.7 1,462,295 - MCAODC_23720 0.90 +1.7
Or see this region's nucleotide sequence