Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt eCs1768 and MCAODC_21510 overlap by 29 nucleotides MCAODC_21510 and MCAODC_21515 overlap by 17 nucleotides MCAODC_21515 and hipB are separated by 76 nucleotides hipB and MCAODC_21525 are separated by 263 nucleotides
MCAODC_21505: eCs1768 - DNA-binding protein, at 1,089,632 to 1,090,672
eCs1768
MCAODC_21510: MCAODC_21510 - Putative bacterial toxin ydaT, at 1,090,644 to 1,091,195
_21510
MCAODC_21515: MCAODC_21515 - transcriptional regulator, at 1,091,179 to 1,091,406
_21515
MCAODC_21520: hipB - transcriptional regulator, at 1,091,483 to 1,091,890
hipB
MCAODC_21525: MCAODC_21525 - hypothetical protein, at 1,092,154 to 1,092,453
_21525
Position (kb)
1091
1092 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1090.185 kb on - strand, within eCs1768 at 1090.409 kb on + strand, within eCs1768 at 1090.554 kb on - strand, within eCs1768 at 1090.554 kb on - strand, within eCs1768 at 1090.588 kb on + strand at 1090.589 kb on - strand at 1090.589 kb on - strand at 1090.656 kb on - strand at 1090.709 kb on - strand, within MCAODC_21510 at 1090.709 kb on - strand, within MCAODC_21510 at 1090.712 kb on - strand, within MCAODC_21510 at 1090.718 kb on - strand, within MCAODC_21510 at 1090.748 kb on + strand, within MCAODC_21510 at 1090.962 kb on - strand, within MCAODC_21510 at 1090.996 kb on - strand, within MCAODC_21510 at 1091.252 kb on + strand, within MCAODC_21515 at 1091.388 kb on + strand at 1091.388 kb on + strand at 1091.940 kb on + strand at 1092.163 kb on + strand at 1092.163 kb on + strand at 1092.164 kb on - strand at 1092.166 kb on - strand at 1092.195 kb on - strand, within MCAODC_21525 at 1092.195 kb on - strand, within MCAODC_21525
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 1,090,185 - eCs1768 MCAODC_21505 0.53 -0.2 1,090,409 + eCs1768 MCAODC_21505 0.75 -2.2 1,090,554 - eCs1768 MCAODC_21505 0.89 +0.6 1,090,554 - eCs1768 MCAODC_21505 0.89 +0.4 1,090,588 + +1.1 1,090,589 - -0.7 1,090,589 - -1.0 1,090,656 - -0.3 1,090,709 - MCAODC_21510 0.12 +0.7 1,090,709 - MCAODC_21510 0.12 +1.1 1,090,712 - MCAODC_21510 0.12 +0.6 1,090,718 - MCAODC_21510 0.13 +2.6 1,090,748 + MCAODC_21510 0.19 +1.2 1,090,962 - MCAODC_21510 0.58 +1.2 1,090,996 - MCAODC_21510 0.64 -1.4 1,091,252 + MCAODC_21515 0.32 +0.4 1,091,388 + -1.1 1,091,388 + +0.8 1,091,940 + -1.0 1,092,163 + +0.9 1,092,163 + +0.6 1,092,164 - -1.0 1,092,166 - -1.5 1,092,195 - MCAODC_21525 0.14 -0.4 1,092,195 - MCAODC_21525 0.14 +0.6
Or see this region's nucleotide sequence