Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_21305 and MCAODC_21310 are separated by 43 nucleotides MCAODC_21310 and MCAODC_21315 are separated by 26 nucleotides MCAODC_21315 and yjdB are separated by 13 nucleotides yjdB and MCAODC_21325 are separated by 7 nucleotides
MCAODC_21305: MCAODC_21305 - phage tail tape measure protein, at 1,063,087 to 1,065,732
_21305
MCAODC_21310: MCAODC_21310 - phage tail assembly protein T, at 1,065,776 to 1,066,084
_21310
MCAODC_21315: MCAODC_21315 - phage minor tail protein G, at 1,066,111 to 1,066,533
_21315
MCAODC_21320: yjdB - phage tail protein, at 1,066,547 to 1,067,299
yjdB
MCAODC_21325: MCAODC_21325 - phage tail protein, at 1,067,307 to 1,067,702
_21325
Position (kb) 1066
1067 Strain fitness (log2 ratio) -1
0
1 at 1067.329 kb on + strand at 1067.330 kb on - strand at 1067.330 kb on - strand at 1067.352 kb on + strand, within MCAODC_21325 at 1067.393 kb on + strand, within MCAODC_21325 at 1067.513 kb on + strand, within MCAODC_21325 at 1067.514 kb on - strand, within MCAODC_21325
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 1,067,329 + -0.4 1,067,330 - +1.1 1,067,330 - -0.4 1,067,352 + MCAODC_21325 0.11 -0.2 1,067,393 + MCAODC_21325 0.22 +0.9 1,067,513 + MCAODC_21325 0.52 -0.3 1,067,514 - MCAODC_21325 0.52 -0.1
Or see this region's nucleotide sequence