Strain Fitness in Escherichia coli ECRC101 around MCAODC_20600

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_20595 and wcaF are separated by 28 nucleotideswcaF and wcaE are separated by 15 nucleotideswcaE and wcaD are separated by 10 nucleotides MCAODC_20595: MCAODC_20595 - GDP-mannose 4,6-dehydratase, at 930,455 to 931,576 _20595 MCAODC_20600: wcaF - colanic acid biosynthesis acetyltransferase WcaF, at 931,605 to 932,153 wcaF MCAODC_20605: wcaE - colanic acid biosynthesis glycosyltransferase WcaE, at 932,169 to 932,915 wcaE MCAODC_20610: wcaD - putative colanic acid polymerase WcaD, at 932,926 to 934,143 wcaD Position (kb) 931 932 933Strain fitness (log2 ratio) -2 -1 0 1 2at 930.645 kb on + strand, within MCAODC_20595at 930.646 kb on - strand, within MCAODC_20595at 930.683 kb on - strand, within MCAODC_20595at 930.789 kb on - strand, within MCAODC_20595at 930.801 kb on - strand, within MCAODC_20595at 930.801 kb on - strand, within MCAODC_20595at 930.875 kb on + strand, within MCAODC_20595at 930.876 kb on - strand, within MCAODC_20595at 930.879 kb on + strand, within MCAODC_20595at 930.880 kb on - strand, within MCAODC_20595at 930.880 kb on - strand, within MCAODC_20595at 930.917 kb on - strand, within MCAODC_20595at 930.928 kb on - strand, within MCAODC_20595at 931.031 kb on - strand, within MCAODC_20595at 931.044 kb on + strand, within MCAODC_20595at 931.044 kb on + strand, within MCAODC_20595at 931.044 kb on + strand, within MCAODC_20595at 931.044 kb on + strand, within MCAODC_20595at 931.044 kb on + strand, within MCAODC_20595at 931.044 kb on + strand, within MCAODC_20595at 931.045 kb on - strand, within MCAODC_20595at 931.045 kb on - strand, within MCAODC_20595at 931.045 kb on - strand, within MCAODC_20595at 931.089 kb on + strand, within MCAODC_20595at 931.090 kb on - strand, within MCAODC_20595at 931.090 kb on - strand, within MCAODC_20595at 931.167 kb on + strand, within MCAODC_20595at 931.168 kb on - strand, within MCAODC_20595at 931.168 kb on - strand, within MCAODC_20595at 931.191 kb on + strand, within MCAODC_20595at 931.273 kb on + strand, within MCAODC_20595at 931.273 kb on + strand, within MCAODC_20595at 931.326 kb on + strand, within MCAODC_20595at 931.327 kb on - strand, within MCAODC_20595at 931.327 kb on - strand, within MCAODC_20595at 931.327 kb on - strand, within MCAODC_20595at 931.358 kb on - strand, within MCAODC_20595at 931.393 kb on - strand, within MCAODC_20595at 931.435 kb on - strand, within MCAODC_20595at 931.480 kb on + strandat 931.481 kb on - strandat 931.680 kb on - strand, within wcaFat 931.782 kb on - strand, within wcaFat 931.782 kb on - strand, within wcaFat 931.782 kb on - strand, within wcaFat 931.837 kb on - strand, within wcaFat 931.896 kb on + strand, within wcaFat 931.897 kb on - strand, within wcaFat 931.933 kb on - strand, within wcaFat 932.041 kb on - strand, within wcaFat 932.097 kb on - strand, within wcaFat 932.100 kb on - strandat 932.207 kb on + strandat 932.208 kb on - strandat 932.615 kb on - strand, within wcaEat 932.705 kb on - strand, within wcaEat 932.737 kb on - strand, within wcaEat 932.744 kb on - strand, within wcaEat 932.922 kb on - strandat 932.959 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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930,645 + MCAODC_20595 0.17 +1.7
930,646 - MCAODC_20595 0.17 +0.8
930,683 - MCAODC_20595 0.20 +1.8
930,789 - MCAODC_20595 0.30 -0.9
930,801 - MCAODC_20595 0.31 +0.0
930,801 - MCAODC_20595 0.31 -0.1
930,875 + MCAODC_20595 0.37 +1.0
930,876 - MCAODC_20595 0.38 -1.0
930,879 + MCAODC_20595 0.38 -0.3
930,880 - MCAODC_20595 0.38 +0.7
930,880 - MCAODC_20595 0.38 +1.6
930,917 - MCAODC_20595 0.41 +0.1
930,928 - MCAODC_20595 0.42 +0.3
931,031 - MCAODC_20595 0.51 +1.7
931,044 + MCAODC_20595 0.52 -0.8
931,044 + MCAODC_20595 0.52 -0.6
931,044 + MCAODC_20595 0.52 +1.3
931,044 + MCAODC_20595 0.52 -0.8
931,044 + MCAODC_20595 0.52 -0.3
931,044 + MCAODC_20595 0.52 +0.4
931,045 - MCAODC_20595 0.53 -0.9
931,045 - MCAODC_20595 0.53 +2.5
931,045 - MCAODC_20595 0.53 -1.3
931,089 + MCAODC_20595 0.57 -0.8
931,090 - MCAODC_20595 0.57 +0.0
931,090 - MCAODC_20595 0.57 -0.7
931,167 + MCAODC_20595 0.63 -2.2
931,168 - MCAODC_20595 0.64 +2.2
931,168 - MCAODC_20595 0.64 -0.7
931,191 + MCAODC_20595 0.66 -0.5
931,273 + MCAODC_20595 0.73 +0.1
931,273 + MCAODC_20595 0.73 +0.4
931,326 + MCAODC_20595 0.78 +0.4
931,327 - MCAODC_20595 0.78 -2.6
931,327 - MCAODC_20595 0.78 -0.3
931,327 - MCAODC_20595 0.78 +0.6
931,358 - MCAODC_20595 0.80 -1.1
931,393 - MCAODC_20595 0.84 +2.7
931,435 - MCAODC_20595 0.87 -0.2
931,480 + -0.1
931,481 - -1.3
931,680 - wcaF MCAODC_20600 0.14 -2.3
931,782 - wcaF MCAODC_20600 0.32 -2.2
931,782 - wcaF MCAODC_20600 0.32 -2.4
931,782 - wcaF MCAODC_20600 0.32 +0.2
931,837 - wcaF MCAODC_20600 0.42 +0.8
931,896 + wcaF MCAODC_20600 0.53 +1.3
931,897 - wcaF MCAODC_20600 0.53 +0.8
931,933 - wcaF MCAODC_20600 0.60 -0.1
932,041 - wcaF MCAODC_20600 0.79 +0.2
932,097 - wcaF MCAODC_20600 0.90 -0.9
932,100 - -2.3
932,207 + +0.2
932,208 - +0.7
932,615 - wcaE MCAODC_20605 0.60 +0.1
932,705 - wcaE MCAODC_20605 0.72 +0.9
932,737 - wcaE MCAODC_20605 0.76 +1.3
932,744 - wcaE MCAODC_20605 0.77 -1.0
932,922 - -0.3
932,959 - -0.1

Or see this region's nucleotide sequence