Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_18625 and MCAODC_18630 overlap by 26 nucleotides MCAODC_18630 and ydjF are separated by 117 nucleotides ydjF and ydjG are separated by 136 nucleotides
MCAODC_18625: MCAODC_18625 - IS3 family transposase, at 583,831 to 584,718
_18625
MCAODC_18630: MCAODC_18630 - Insertion sequence 2 OrfA protein, at 584,693 to 584,863
_18630
MCAODC_18635: ydjF - Uncharacterized HTH-type transcriptional regulator YdjF, at 584,981 to 585,739
ydjF
MCAODC_18640: ydjG - NADH-dependent methylglyoxal reductase, at 585,876 to 586,856
ydjG
Position (kb) 584
585
586 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 584.777 kb on - strand, within MCAODC_18630 at 585.058 kb on - strand, within ydjF at 585.208 kb on + strand, within ydjF at 585.221 kb on - strand, within ydjF at 585.221 kb on - strand, within ydjF at 585.231 kb on - strand, within ydjF at 585.395 kb on - strand, within ydjF at 585.494 kb on - strand, within ydjF at 585.510 kb on + strand, within ydjF at 585.532 kb on - strand, within ydjF at 585.583 kb on - strand, within ydjF at 585.583 kb on - strand, within ydjF at 585.710 kb on - strand at 585.744 kb on - strand at 585.873 kb on + strand at 585.878 kb on - strand at 586.021 kb on - strand, within ydjG at 586.091 kb on + strand, within ydjG at 586.299 kb on - strand, within ydjG at 586.350 kb on - strand, within ydjG at 586.387 kb on - strand, within ydjG at 586.460 kb on - strand, within ydjG at 586.460 kb on - strand, within ydjG at 586.460 kb on - strand, within ydjG at 586.460 kb on - strand, within ydjG at 586.460 kb on - strand, within ydjG at 586.460 kb on - strand, within ydjG at 586.460 kb on - strand, within ydjG at 586.460 kb on - strand, within ydjG at 586.541 kb on - strand, within ydjG at 586.615 kb on - strand, within ydjG at 586.615 kb on - strand, within ydjG at 586.658 kb on + strand, within ydjG at 586.668 kb on - strand, within ydjG at 586.679 kb on + strand, within ydjG at 586.680 kb on - strand, within ydjG at 586.680 kb on - strand, within ydjG at 586.682 kb on - strand, within ydjG at 586.695 kb on - strand, within ydjG
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 584,777 - MCAODC_18630 0.49 +1.7 585,058 - ydjF MCAODC_18635 0.10 +1.1 585,208 + ydjF MCAODC_18635 0.30 -2.5 585,221 - ydjF MCAODC_18635 0.32 +0.3 585,221 - ydjF MCAODC_18635 0.32 +0.4 585,231 - ydjF MCAODC_18635 0.33 +0.6 585,395 - ydjF MCAODC_18635 0.55 +0.0 585,494 - ydjF MCAODC_18635 0.68 -3.0 585,510 + ydjF MCAODC_18635 0.70 +0.8 585,532 - ydjF MCAODC_18635 0.73 +1.0 585,583 - ydjF MCAODC_18635 0.79 +0.1 585,583 - ydjF MCAODC_18635 0.79 -0.1 585,710 - +0.5 585,744 - -0.6 585,873 + +0.5 585,878 - +0.7 586,021 - ydjG MCAODC_18640 0.15 -0.0 586,091 + ydjG MCAODC_18640 0.22 +0.2 586,299 - ydjG MCAODC_18640 0.43 -0.5 586,350 - ydjG MCAODC_18640 0.48 +2.5 586,387 - ydjG MCAODC_18640 0.52 -0.5 586,460 - ydjG MCAODC_18640 0.60 +0.7 586,460 - ydjG MCAODC_18640 0.60 -0.8 586,460 - ydjG MCAODC_18640 0.60 -0.5 586,460 - ydjG MCAODC_18640 0.60 +0.4 586,460 - ydjG MCAODC_18640 0.60 +0.3 586,460 - ydjG MCAODC_18640 0.60 -0.0 586,460 - ydjG MCAODC_18640 0.60 -0.7 586,460 - ydjG MCAODC_18640 0.60 +0.1 586,541 - ydjG MCAODC_18640 0.68 +1.5 586,615 - ydjG MCAODC_18640 0.75 +0.5 586,615 - ydjG MCAODC_18640 0.75 +0.7 586,658 + ydjG MCAODC_18640 0.80 -0.1 586,668 - ydjG MCAODC_18640 0.81 +0.3 586,679 + ydjG MCAODC_18640 0.82 -0.5 586,680 - ydjG MCAODC_18640 0.82 -0.3 586,680 - ydjG MCAODC_18640 0.82 -0.3 586,682 - ydjG MCAODC_18640 0.82 -0.8 586,695 - ydjG MCAODC_18640 0.83 +0.3
Or see this region's nucleotide sequence