Strain Fitness in Escherichia coli ECRC101 around MCAODC_18365

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_18360 and yniD are separated by 174 nucleotidesyniD and ydiY are separated by 52 nucleotides MCAODC_18360: MCAODC_18360 - ShET2 enterotoxin, N-terminal region, at 532,074 to 533,972 _18360 MCAODC_18365: yniD - Uncharacterized protein YniD, at 534,147 to 534,254 yniD MCAODC_18370: ydiY - Uncharacterized protein YdiY, at 534,307 to 535,065 ydiY Position (kb) 534 535Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 533.262 kb on - strand, within MCAODC_18360at 533.921 kb on - strandat 534.047 kb on + strandat 534.071 kb on + strandat 534.131 kb on + strandat 534.226 kb on + strand, within yniDat 534.303 kb on - strandat 534.309 kb on - strandat 534.309 kb on - strandat 534.318 kb on - strandat 534.329 kb on - strandat 534.329 kb on - strandat 534.396 kb on - strand, within ydiYat 534.396 kb on - strand, within ydiYat 534.437 kb on - strand, within ydiYat 534.528 kb on - strand, within ydiYat 534.579 kb on - strand, within ydiYat 534.579 kb on - strand, within ydiYat 534.691 kb on - strand, within ydiYat 534.691 kb on - strand, within ydiYat 534.691 kb on - strand, within ydiYat 534.693 kb on - strand, within ydiYat 534.724 kb on + strand, within ydiYat 534.725 kb on - strand, within ydiYat 534.735 kb on - strand, within ydiYat 534.799 kb on - strand, within ydiYat 534.799 kb on - strand, within ydiYat 534.914 kb on + strand, within ydiYat 535.182 kb on - strandat 535.211 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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533,262 - MCAODC_18360 0.63 -2.0
533,921 - +1.4
534,047 + -0.8
534,071 + +1.8
534,131 + -0.8
534,226 + yniD MCAODC_18365 0.73 +0.3
534,303 - +0.7
534,309 - -0.9
534,309 - -0.5
534,318 - -1.1
534,329 - -0.5
534,329 - -0.8
534,396 - ydiY MCAODC_18370 0.12 +1.6
534,396 - ydiY MCAODC_18370 0.12 +0.5
534,437 - ydiY MCAODC_18370 0.17 -2.7
534,528 - ydiY MCAODC_18370 0.29 +0.6
534,579 - ydiY MCAODC_18370 0.36 -0.5
534,579 - ydiY MCAODC_18370 0.36 +0.9
534,691 - ydiY MCAODC_18370 0.51 -0.2
534,691 - ydiY MCAODC_18370 0.51 -1.7
534,691 - ydiY MCAODC_18370 0.51 +0.4
534,693 - ydiY MCAODC_18370 0.51 +0.5
534,724 + ydiY MCAODC_18370 0.55 -1.0
534,725 - ydiY MCAODC_18370 0.55 +0.1
534,735 - ydiY MCAODC_18370 0.56 -3.3
534,799 - ydiY MCAODC_18370 0.65 +0.5
534,799 - ydiY MCAODC_18370 0.65 +0.0
534,914 + ydiY MCAODC_18370 0.80 +0.5
535,182 - -1.0
535,211 + +0.6

Or see this region's nucleotide sequence