Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydhS and ydhT are separated by 11 nucleotides ydhT and ydhU are separated by 51 nucleotides ydhU and MCAODC_18095 overlap by 4 nucleotides MCAODC_18095 and ydhW are separated by 63 nucleotides
MCAODC_18080: ydhS - FAD-NAD(P)-binding protein, at 476,111 to 477,715
ydhS
MCAODC_18085: ydhT - protein YdhT, at 477,727 to 478,491
ydhT
MCAODC_18090: ydhU - Putative cytochrome YdhU, at 478,543 to 479,328
ydhU
MCAODC_18095: MCAODC_18095 - Putative oxidoreductase Fe-S subunit, at 479,325 to 479,993
_18095
MCAODC_18100: ydhW - YdhW family putative oxidoreductase system protein, at 480,057 to 480,695
ydhW
Position (kb) 478
479
480 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 477.726 kb on - strand at 477.756 kb on + strand at 477.836 kb on + strand, within ydhT at 477.837 kb on - strand, within ydhT at 477.870 kb on + strand, within ydhT at 477.932 kb on - strand, within ydhT at 477.932 kb on - strand, within ydhT at 477.932 kb on - strand, within ydhT at 477.932 kb on - strand, within ydhT at 477.932 kb on - strand, within ydhT at 478.029 kb on + strand, within ydhT at 478.180 kb on - strand, within ydhT at 478.180 kb on - strand, within ydhT at 478.234 kb on - strand, within ydhT at 478.383 kb on - strand, within ydhT at 478.383 kb on - strand, within ydhT at 478.410 kb on + strand, within ydhT at 478.449 kb on - strand at 478.644 kb on + strand, within ydhU at 479.075 kb on - strand, within ydhU at 479.123 kb on + strand, within ydhU at 479.225 kb on - strand, within ydhU at 479.280 kb on - strand at 479.280 kb on - strand at 479.328 kb on + strand at 479.411 kb on - strand, within MCAODC_18095 at 479.571 kb on - strand, within MCAODC_18095 at 479.608 kb on + strand, within MCAODC_18095 at 480.079 kb on - strand at 480.097 kb on - strand at 480.166 kb on - strand, within ydhW at 480.174 kb on + strand, within ydhW at 480.175 kb on - strand, within ydhW at 480.175 kb on - strand, within ydhW at 480.175 kb on - strand, within ydhW at 480.241 kb on + strand, within ydhW at 480.242 kb on - strand, within ydhW at 480.242 kb on - strand, within ydhW at 480.242 kb on - strand, within ydhW at 480.245 kb on - strand, within ydhW at 480.245 kb on - strand, within ydhW
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 477,726 - -0.2 477,756 + +0.6 477,836 + ydhT MCAODC_18085 0.14 +0.3 477,837 - ydhT MCAODC_18085 0.14 -1.1 477,870 + ydhT MCAODC_18085 0.19 -2.9 477,932 - ydhT MCAODC_18085 0.27 +0.9 477,932 - ydhT MCAODC_18085 0.27 -0.5 477,932 - ydhT MCAODC_18085 0.27 +0.3 477,932 - ydhT MCAODC_18085 0.27 +0.7 477,932 - ydhT MCAODC_18085 0.27 -2.4 478,029 + ydhT MCAODC_18085 0.39 +1.0 478,180 - ydhT MCAODC_18085 0.59 -0.3 478,180 - ydhT MCAODC_18085 0.59 -0.1 478,234 - ydhT MCAODC_18085 0.66 +0.7 478,383 - ydhT MCAODC_18085 0.86 -0.7 478,383 - ydhT MCAODC_18085 0.86 -1.6 478,410 + ydhT MCAODC_18085 0.89 -4.0 478,449 - -0.8 478,644 + ydhU MCAODC_18090 0.13 -0.6 479,075 - ydhU MCAODC_18090 0.68 +0.7 479,123 + ydhU MCAODC_18090 0.74 +0.4 479,225 - ydhU MCAODC_18090 0.87 +0.3 479,280 - +0.9 479,280 - -0.6 479,328 + +0.0 479,411 - MCAODC_18095 0.13 +1.5 479,571 - MCAODC_18095 0.37 +0.7 479,608 + MCAODC_18095 0.42 -0.3 480,079 - -0.2 480,097 - -0.3 480,166 - ydhW MCAODC_18100 0.17 +0.1 480,174 + ydhW MCAODC_18100 0.18 +1.3 480,175 - ydhW MCAODC_18100 0.18 +0.3 480,175 - ydhW MCAODC_18100 0.18 +1.5 480,175 - ydhW MCAODC_18100 0.18 +2.2 480,241 + ydhW MCAODC_18100 0.29 -0.8 480,242 - ydhW MCAODC_18100 0.29 +1.3 480,242 - ydhW MCAODC_18100 0.29 +0.9 480,242 - ydhW MCAODC_18100 0.29 -1.2 480,245 - ydhW MCAODC_18100 0.29 -0.4 480,245 - ydhW MCAODC_18100 0.29 -0.0
Or see this region's nucleotide sequence