Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ynfC and MCAODC_17630 are separated by 71 nucleotides MCAODC_17630 and ynfE are separated by 198 nucleotides ynfE and ynfF are separated by 87 nucleotides
MCAODC_17625: ynfC - YnfC family lipoprotein, at 385,818 to 386,564
ynfC
MCAODC_17630: MCAODC_17630 - DUF1161 domain-containing protein, at 386,636 to 386,941
_17630
MCAODC_17635: ynfE - Putative dimethyl sulfoxide reductase chain YnfE, at 387,140 to 389,566
ynfE
MCAODC_17640: ynfF - putative dimethyl sulfoxide reductase chain YnfF, at 389,654 to 392,050
ynfF
Position (kb) 387
388
389
390 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 386.257 kb on - strand, within ynfC at 386.371 kb on - strand, within ynfC at 386.564 kb on + strand at 386.734 kb on - strand, within MCAODC_17630 at 386.785 kb on + strand, within MCAODC_17630 at 386.785 kb on + strand, within MCAODC_17630 at 386.785 kb on + strand, within MCAODC_17630 at 386.786 kb on - strand, within MCAODC_17630 at 386.786 kb on - strand, within MCAODC_17630 at 386.864 kb on + strand, within MCAODC_17630 at 386.909 kb on - strand, within MCAODC_17630 at 386.940 kb on - strand at 386.942 kb on + strand at 386.943 kb on - strand at 386.943 kb on - strand at 386.955 kb on - strand at 386.990 kb on + strand at 386.991 kb on - strand at 386.991 kb on - strand at 386.998 kb on - strand at 387.139 kb on + strand at 387.270 kb on + strand at 387.355 kb on + strand at 387.402 kb on - strand, within ynfE at 387.417 kb on + strand, within ynfE at 387.458 kb on - strand, within ynfE at 387.458 kb on - strand, within ynfE at 387.529 kb on + strand, within ynfE at 387.530 kb on - strand, within ynfE at 387.550 kb on + strand, within ynfE at 387.603 kb on + strand, within ynfE at 387.604 kb on - strand, within ynfE at 387.607 kb on + strand, within ynfE at 387.607 kb on + strand, within ynfE at 387.608 kb on - strand, within ynfE at 387.755 kb on + strand, within ynfE at 387.755 kb on + strand, within ynfE at 388.061 kb on + strand, within ynfE at 388.118 kb on + strand, within ynfE at 388.250 kb on + strand, within ynfE at 388.250 kb on + strand, within ynfE at 388.251 kb on - strand, within ynfE at 388.251 kb on - strand, within ynfE at 388.252 kb on + strand, within ynfE at 388.316 kb on - strand, within ynfE at 388.325 kb on - strand, within ynfE at 388.383 kb on - strand, within ynfE at 388.385 kb on - strand, within ynfE at 388.385 kb on - strand, within ynfE at 388.396 kb on - strand, within ynfE at 388.396 kb on - strand, within ynfE at 388.418 kb on - strand, within ynfE at 388.534 kb on + strand, within ynfE at 388.755 kb on - strand, within ynfE at 388.943 kb on + strand, within ynfE at 388.971 kb on - strand, within ynfE at 388.971 kb on - strand, within ynfE at 389.007 kb on - strand, within ynfE at 389.300 kb on - strand, within ynfE at 389.301 kb on + strand, within ynfE at 389.348 kb on + strand at 389.348 kb on + strand at 389.348 kb on + strand at 389.348 kb on + strand at 389.348 kb on + strand at 389.446 kb on + strand at 389.446 kb on + strand at 389.447 kb on - strand at 389.447 kb on - strand at 389.485 kb on + strand at 389.562 kb on + strand at 389.572 kb on + strand at 389.572 kb on + strand at 389.580 kb on + strand at 389.581 kb on - strand at 389.614 kb on + strand at 389.614 kb on + strand at 389.925 kb on + strand, within ynfF at 389.965 kb on + strand, within ynfF at 390.025 kb on - strand, within ynfF at 390.059 kb on - strand, within ynfF at 390.239 kb on + strand, within ynfF at 390.240 kb on - strand, within ynfF at 390.242 kb on - strand, within ynfF at 390.301 kb on + strand, within ynfF at 390.301 kb on + strand, within ynfF at 390.353 kb on + strand, within ynfF at 390.356 kb on + strand, within ynfF at 390.415 kb on + strand, within ynfF at 390.545 kb on + strand, within ynfF at 390.545 kb on + strand, within ynfF
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 386,257 - ynfC MCAODC_17625 0.59 -0.6 386,371 - ynfC MCAODC_17625 0.74 -2.5 386,564 + +0.2 386,734 - MCAODC_17630 0.32 -2.5 386,785 + MCAODC_17630 0.49 +0.6 386,785 + MCAODC_17630 0.49 -0.8 386,785 + MCAODC_17630 0.49 -2.7 386,786 - MCAODC_17630 0.49 -0.3 386,786 - MCAODC_17630 0.49 +2.2 386,864 + MCAODC_17630 0.75 -1.4 386,909 - MCAODC_17630 0.89 -1.1 386,940 - -2.5 386,942 + -3.3 386,943 - +0.8 386,943 - -0.4 386,955 - -0.0 386,990 + -0.7 386,991 - -1.2 386,991 - -0.1 386,998 - +0.0 387,139 + -0.4 387,270 + +1.1 387,355 + -2.6 387,402 - ynfE MCAODC_17635 0.11 +1.8 387,417 + ynfE MCAODC_17635 0.11 +0.4 387,458 - ynfE MCAODC_17635 0.13 -0.1 387,458 - ynfE MCAODC_17635 0.13 +0.7 387,529 + ynfE MCAODC_17635 0.16 +1.3 387,530 - ynfE MCAODC_17635 0.16 -0.4 387,550 + ynfE MCAODC_17635 0.17 -0.3 387,603 + ynfE MCAODC_17635 0.19 -2.4 387,604 - ynfE MCAODC_17635 0.19 +2.3 387,607 + ynfE MCAODC_17635 0.19 -0.5 387,607 + ynfE MCAODC_17635 0.19 +0.2 387,608 - ynfE MCAODC_17635 0.19 -0.1 387,755 + ynfE MCAODC_17635 0.25 -0.3 387,755 + ynfE MCAODC_17635 0.25 -1.7 388,061 + ynfE MCAODC_17635 0.38 -0.1 388,118 + ynfE MCAODC_17635 0.40 -0.1 388,250 + ynfE MCAODC_17635 0.46 -0.9 388,250 + ynfE MCAODC_17635 0.46 +0.1 388,251 - ynfE MCAODC_17635 0.46 +0.2 388,251 - ynfE MCAODC_17635 0.46 +0.3 388,252 + ynfE MCAODC_17635 0.46 -0.6 388,316 - ynfE MCAODC_17635 0.48 -1.0 388,325 - ynfE MCAODC_17635 0.49 -1.1 388,383 - ynfE MCAODC_17635 0.51 -0.8 388,385 - ynfE MCAODC_17635 0.51 -0.1 388,385 - ynfE MCAODC_17635 0.51 +0.4 388,396 - ynfE MCAODC_17635 0.52 +0.3 388,396 - ynfE MCAODC_17635 0.52 +0.1 388,418 - ynfE MCAODC_17635 0.53 -0.1 388,534 + ynfE MCAODC_17635 0.57 -0.9 388,755 - ynfE MCAODC_17635 0.67 -2.0 388,943 + ynfE MCAODC_17635 0.74 -0.1 388,971 - ynfE MCAODC_17635 0.75 -0.1 388,971 - ynfE MCAODC_17635 0.75 -1.2 389,007 - ynfE MCAODC_17635 0.77 -0.9 389,300 - ynfE MCAODC_17635 0.89 -0.4 389,301 + ynfE MCAODC_17635 0.89 -1.9 389,348 + +0.4 389,348 + +1.2 389,348 + -1.1 389,348 + +0.1 389,348 + +0.7 389,446 + +0.2 389,446 + -0.3 389,447 - +0.4 389,447 - +1.4 389,485 + +1.1 389,562 + -2.0 389,572 + -0.9 389,572 + -2.8 389,580 + -0.2 389,581 - -1.3 389,614 + +0.3 389,614 + -0.9 389,925 + ynfF MCAODC_17640 0.11 -0.4 389,965 + ynfF MCAODC_17640 0.13 -0.3 390,025 - ynfF MCAODC_17640 0.15 -0.6 390,059 - ynfF MCAODC_17640 0.17 -0.2 390,239 + ynfF MCAODC_17640 0.24 +0.6 390,240 - ynfF MCAODC_17640 0.24 +1.6 390,242 - ynfF MCAODC_17640 0.25 -3.3 390,301 + ynfF MCAODC_17640 0.27 -2.0 390,301 + ynfF MCAODC_17640 0.27 +0.2 390,353 + ynfF MCAODC_17640 0.29 +1.2 390,356 + ynfF MCAODC_17640 0.29 +0.6 390,415 + ynfF MCAODC_17640 0.32 -0.6 390,545 + ynfF MCAODC_17640 0.37 +0.4 390,545 + ynfF MCAODC_17640 0.37 -0.1
Or see this region's nucleotide sequence