Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yddG and fdnG are separated by 288 nucleotides fdnG and fdnH are separated by 12 nucleotides fdnH and fdnI overlap by 8 nucleotides
MCAODC_16550: yddG - aromatic amino acid efflux DMT transporter YddG, at 205,283 to 206,107
yddG
MCAODC_16555: fdnG - formate dehydrogenase-N subunit alpha, at 206,396 to 209,443
fdnG
MCAODC_16560: fdnH - formate dehydrogenase N subunit beta, at 209,456 to 210,340
fdnH
MCAODC_16565: fdnI - formate dehydrogenase-N subunit gamma, at 210,333 to 210,986
fdnI
Position (kb) 206
207
208
209
210 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 205.477 kb on - strand, within yddG at 205.784 kb on + strand, within yddG at 205.867 kb on - strand, within yddG at 205.975 kb on - strand, within yddG at 206.047 kb on + strand at 206.270 kb on - strand at 206.353 kb on + strand at 206.369 kb on + strand at 206.369 kb on + strand at 206.559 kb on + strand at 206.579 kb on + strand at 206.579 kb on + strand at 206.580 kb on - strand at 206.767 kb on + strand, within fdnG at 206.853 kb on + strand, within fdnG at 207.238 kb on + strand, within fdnG at 207.309 kb on - strand, within fdnG at 207.664 kb on + strand, within fdnG at 207.765 kb on + strand, within fdnG at 208.128 kb on - strand, within fdnG at 208.270 kb on + strand, within fdnG at 208.364 kb on + strand, within fdnG at 208.364 kb on + strand, within fdnG at 208.365 kb on - strand, within fdnG at 208.439 kb on + strand, within fdnG at 208.439 kb on + strand, within fdnG at 208.473 kb on + strand, within fdnG at 208.478 kb on - strand, within fdnG at 208.511 kb on + strand, within fdnG at 208.511 kb on + strand, within fdnG at 208.585 kb on + strand, within fdnG at 208.586 kb on - strand, within fdnG at 208.610 kb on + strand, within fdnG at 208.684 kb on + strand, within fdnG at 208.730 kb on + strand, within fdnG at 208.870 kb on + strand, within fdnG at 208.973 kb on - strand, within fdnG at 209.194 kb on + strand at 209.280 kb on + strand at 209.281 kb on - strand at 209.351 kb on + strand at 209.351 kb on + strand at 209.352 kb on - strand at 209.353 kb on + strand at 209.353 kb on + strand at 209.353 kb on + strand at 209.353 kb on + strand at 209.354 kb on - strand at 209.354 kb on - strand at 209.355 kb on + strand at 209.355 kb on + strand at 209.355 kb on + strand at 209.355 kb on + strand at 209.355 kb on + strand at 209.356 kb on - strand at 209.359 kb on + strand at 209.531 kb on + strand at 209.651 kb on + strand, within fdnH at 209.701 kb on + strand, within fdnH at 209.816 kb on + strand, within fdnH at 209.929 kb on + strand, within fdnH at 209.929 kb on + strand, within fdnH at 209.929 kb on + strand, within fdnH at 209.929 kb on + strand, within fdnH at 209.930 kb on - strand, within fdnH at 209.930 kb on - strand, within fdnH at 210.095 kb on + strand, within fdnH at 210.096 kb on - strand, within fdnH at 210.127 kb on + strand, within fdnH at 210.127 kb on + strand, within fdnH at 210.131 kb on + strand, within fdnH at 210.131 kb on + strand, within fdnH at 210.281 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 205,477 - yddG MCAODC_16550 0.24 +0.6 205,784 + yddG MCAODC_16550 0.61 -2.1 205,867 - yddG MCAODC_16550 0.71 +0.6 205,975 - yddG MCAODC_16550 0.84 +4.0 206,047 + -1.1 206,270 - +1.4 206,353 + -0.2 206,369 + +0.6 206,369 + +0.6 206,559 + +0.2 206,579 + +0.9 206,579 + +0.3 206,580 - -1.3 206,767 + fdnG MCAODC_16555 0.12 -0.4 206,853 + fdnG MCAODC_16555 0.15 -0.1 207,238 + fdnG MCAODC_16555 0.28 +0.2 207,309 - fdnG MCAODC_16555 0.30 -0.9 207,664 + fdnG MCAODC_16555 0.42 -0.2 207,765 + fdnG MCAODC_16555 0.45 -1.9 208,128 - fdnG MCAODC_16555 0.57 -0.1 208,270 + fdnG MCAODC_16555 0.61 +1.1 208,364 + fdnG MCAODC_16555 0.65 -0.6 208,364 + fdnG MCAODC_16555 0.65 -0.8 208,365 - fdnG MCAODC_16555 0.65 +0.1 208,439 + fdnG MCAODC_16555 0.67 +0.8 208,439 + fdnG MCAODC_16555 0.67 -2.0 208,473 + fdnG MCAODC_16555 0.68 -1.2 208,478 - fdnG MCAODC_16555 0.68 +3.3 208,511 + fdnG MCAODC_16555 0.69 -0.2 208,511 + fdnG MCAODC_16555 0.69 -0.0 208,585 + fdnG MCAODC_16555 0.72 -2.6 208,586 - fdnG MCAODC_16555 0.72 -1.4 208,610 + fdnG MCAODC_16555 0.73 -0.7 208,684 + fdnG MCAODC_16555 0.75 -1.4 208,730 + fdnG MCAODC_16555 0.77 -1.6 208,870 + fdnG MCAODC_16555 0.81 +1.0 208,973 - fdnG MCAODC_16555 0.85 -0.6 209,194 + -2.7 209,280 + -0.7 209,281 - -0.4 209,351 + -1.9 209,351 + -0.1 209,352 - +1.4 209,353 + -2.0 209,353 + +1.1 209,353 + -0.5 209,353 + -0.0 209,354 - +0.9 209,354 - -0.2 209,355 + +0.0 209,355 + +0.1 209,355 + +3.0 209,355 + -0.2 209,355 + -0.4 209,356 - -0.2 209,359 + -0.7 209,531 + +0.7 209,651 + fdnH MCAODC_16560 0.22 -2.1 209,701 + fdnH MCAODC_16560 0.28 -0.1 209,816 + fdnH MCAODC_16560 0.41 +1.5 209,929 + fdnH MCAODC_16560 0.53 +0.3 209,929 + fdnH MCAODC_16560 0.53 -1.1 209,929 + fdnH MCAODC_16560 0.53 -0.1 209,929 + fdnH MCAODC_16560 0.53 +1.4 209,930 - fdnH MCAODC_16560 0.54 +0.5 209,930 - fdnH MCAODC_16560 0.54 -0.3 210,095 + fdnH MCAODC_16560 0.72 +0.6 210,096 - fdnH MCAODC_16560 0.72 +0.6 210,127 + fdnH MCAODC_16560 0.76 +0.9 210,127 + fdnH MCAODC_16560 0.76 -0.6 210,131 + fdnH MCAODC_16560 0.76 -0.5 210,131 + fdnH MCAODC_16560 0.76 +0.7 210,281 + -0.8
Or see this region's nucleotide sequence