Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pepP and ubiH overlap by 4 nucleotides ubiH and ubiI are separated by 23 nucleotides
MCAODC_10025: pepP - Xaa-Pro aminopeptidase, at 1,992,828 to 1,994,153
pepP
MCAODC_10030: ubiH - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 1,994,150 to 1,995,328
ubiH
MCAODC_10035: ubiI - FAD-dependent 2-octaprenylphenol hydroxylase, at 1,995,352 to 1,996,554
ubiI
Position (kb)
1994
1995
1996 Strain fitness (log2 ratio)
-2
-1
0
1 at 1993.212 kb on + strand, within pepP at 1993.212 kb on + strand, within pepP at 1993.236 kb on + strand, within pepP at 1993.415 kb on + strand, within pepP at 1993.517 kb on + strand, within pepP at 1993.528 kb on + strand, within pepP at 1993.528 kb on + strand, within pepP at 1993.560 kb on + strand, within pepP at 1993.560 kb on + strand, within pepP at 1993.560 kb on + strand, within pepP at 1993.698 kb on + strand, within pepP at 1993.698 kb on + strand, within pepP at 1993.740 kb on + strand, within pepP at 1993.790 kb on + strand, within pepP at 1993.790 kb on + strand, within pepP at 1993.807 kb on + strand, within pepP at 1993.832 kb on + strand, within pepP at 1993.874 kb on + strand, within pepP at 1993.989 kb on + strand, within pepP at 1993.989 kb on + strand, within pepP at 1993.989 kb on + strand, within pepP at 1993.989 kb on + strand, within pepP at 1993.989 kb on + strand, within pepP at 1994.042 kb on + strand at 1995.339 kb on + strand at 1995.340 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 1,993,212 + pepP MCAODC_10025 0.29 +0.2 1,993,212 + pepP MCAODC_10025 0.29 +1.6 1,993,236 + pepP MCAODC_10025 0.31 -0.5 1,993,415 + pepP MCAODC_10025 0.44 -0.2 1,993,517 + pepP MCAODC_10025 0.52 -1.5 1,993,528 + pepP MCAODC_10025 0.53 -1.1 1,993,528 + pepP MCAODC_10025 0.53 +0.5 1,993,560 + pepP MCAODC_10025 0.55 +0.1 1,993,560 + pepP MCAODC_10025 0.55 -0.1 1,993,560 + pepP MCAODC_10025 0.55 -0.5 1,993,698 + pepP MCAODC_10025 0.66 +0.3 1,993,698 + pepP MCAODC_10025 0.66 -1.1 1,993,740 + pepP MCAODC_10025 0.69 -0.6 1,993,790 + pepP MCAODC_10025 0.73 +0.1 1,993,790 + pepP MCAODC_10025 0.73 -0.1 1,993,807 + pepP MCAODC_10025 0.74 +0.6 1,993,832 + pepP MCAODC_10025 0.76 -2.5 1,993,874 + pepP MCAODC_10025 0.79 -0.3 1,993,989 + pepP MCAODC_10025 0.88 +0.0 1,993,989 + pepP MCAODC_10025 0.88 -0.2 1,993,989 + pepP MCAODC_10025 0.88 -0.7 1,993,989 + pepP MCAODC_10025 0.88 +0.2 1,993,989 + pepP MCAODC_10025 0.88 +0.8 1,994,042 + -0.5 1,995,339 + -0.2 1,995,340 - +0.3
Or see this region's nucleotide sequence