Strain Fitness in Escherichia coli ECRC101 around MCAODC_09320

Experiment: Control_ECRC101_WM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Control_ECRC101_WM
1,858,140	+				+0.5
1,858,140	+				-0.3
1,858,140	+				-1.1
1,858,140	+				+0.0
1,858,141	-				+0.0
1,858,141	-				-0.4
1,858,143	+				-0.3
1,858,144	-				+0.4
1,858,174	-				-0.6
1,858,198	-				+2.0
1,858,238	-				-0.4
1,858,296	+				+0.3
1,858,427	+	ygiB	MCAODC_09315	0.25	+1.0
1,858,452	-	ygiB	MCAODC_09315	0.29	-0.3
1,858,455	+	ygiB	MCAODC_09315	0.29	+2.5
1,858,456	-	ygiB	MCAODC_09315	0.29	-1.4
1,858,545	-	ygiB	MCAODC_09315	0.43	+0.8
1,858,545	-	ygiB	MCAODC_09315	0.43	-0.5
1,858,685	+	ygiB	MCAODC_09315	0.64	-1.5
1,858,698	+	ygiB	MCAODC_09315	0.65	+0.4
1,858,698	+	ygiB	MCAODC_09315	0.65	-0.2
1,858,698	+	ygiB	MCAODC_09315	0.65	-0.1
1,858,699	-	ygiB	MCAODC_09315	0.66	-0.6
1,858,728	-	ygiB	MCAODC_09315	0.70	+0.3
1,858,737	+	ygiB	MCAODC_09315	0.71	+0.5
1,858,952	+				-0.0
1,858,952	+				+1.6
1,858,953	-				+0.4
1,858,953	-				+0.6
1,858,957	-				+0.6
1,859,019	+				-1.4
1,859,020	-				-0.9
1,859,032	+				-0.3
1,859,033	-				+1.5
1,859,094	+				+0.1
1,859,094	+				+0.9
1,859,112	+				+0.1
1,859,175	+				+0.5
1,859,176	-				+0.8
1,859,176	-				+0.7
1,859,176	-				+0.1
1,859,296	-	tolC	MCAODC_09320	0.15	-2.0
1,859,355	-	tolC	MCAODC_09320	0.19	-0.9
1,859,472	+	tolC	MCAODC_09320	0.27	-1.9
1,859,473	-	tolC	MCAODC_09320	0.27	+1.7
1,859,476	-	tolC	MCAODC_09320	0.27	+0.6
1,859,476	-	tolC	MCAODC_09320	0.27	+0.9
1,859,482	-	tolC	MCAODC_09320	0.27	-1.2
1,859,482	-	tolC	MCAODC_09320	0.27	-2.1
1,859,491	-	tolC	MCAODC_09320	0.28	+1.4
1,859,491	-	tolC	MCAODC_09320	0.28	-0.5
1,859,491	-	tolC	MCAODC_09320	0.28	+1.2
1,859,573	+	tolC	MCAODC_09320	0.33	+0.3
1,859,574	-	tolC	MCAODC_09320	0.34	-0.3
1,859,673	-	tolC	MCAODC_09320	0.40	-1.5
1,859,712	-	tolC	MCAODC_09320	0.43	-1.3
1,859,712	-	tolC	MCAODC_09320	0.43	-0.6
1,859,712	-	tolC	MCAODC_09320	0.43	-0.9
1,859,734	-	tolC	MCAODC_09320	0.44	+0.1
1,859,927	+	tolC	MCAODC_09320	0.57	+0.7
1,859,928	-	tolC	MCAODC_09320	0.57	+2.1
1,859,928	-	tolC	MCAODC_09320	0.57	+1.0
1,859,928	-	tolC	MCAODC_09320	0.57	+0.3
1,859,928	-	tolC	MCAODC_09320	0.57	-0.6
1,859,974	-	tolC	MCAODC_09320	0.61	-0.7
1,859,976	+	tolC	MCAODC_09320	0.61	+1.8
1,859,976	+	tolC	MCAODC_09320	0.61	+0.0
1,859,976	+	tolC	MCAODC_09320	0.61	+0.7
1,859,977	-	tolC	MCAODC_09320	0.61	+0.7
1,859,977	-	tolC	MCAODC_09320	0.61	+0.2
1,860,061	-	tolC	MCAODC_09320	0.66	-0.5
1,860,083	-	tolC	MCAODC_09320	0.68	+1.0
1,860,083	-	tolC	MCAODC_09320	0.68	-0.1
1,860,083	-	tolC	MCAODC_09320	0.68	+0.8
1,860,136	-	tolC	MCAODC_09320	0.71	+0.2
1,860,200	+	tolC	MCAODC_09320	0.76	-2.3
1,860,262	-	tolC	MCAODC_09320	0.80	-0.9
1,860,262	-	tolC	MCAODC_09320	0.80	-0.4
1,860,343	-	tolC	MCAODC_09320	0.85	-0.9
1,860,343	-	tolC	MCAODC_09320	0.85	+0.1
1,860,343	-	tolC	MCAODC_09320	0.85	-1.7
1,860,343	-	tolC	MCAODC_09320	0.85	-1.2
1,860,343	-	tolC	MCAODC_09320	0.85	-2.8
1,860,343	-	tolC	MCAODC_09320	0.85	+0.0
1,860,343	-	tolC	MCAODC_09320	0.85	-1.6
1,860,345	-	tolC	MCAODC_09320	0.86	+0.3
1,860,345	-	tolC	MCAODC_09320	0.86	+0.7
1,860,351	-	tolC	MCAODC_09320	0.86	-0.8
1,860,351	-	tolC	MCAODC_09320	0.86	+0.5
1,860,368	-	tolC	MCAODC_09320	0.87	+1.3
1,860,368	-	tolC	MCAODC_09320	0.87	+2.7
1,860,454	-				-1.5
1,860,456	+				-0.1
1,860,456	+				-1.3
1,860,456	+				+0.9
1,860,582	+				+0.4
1,860,582	+				+0.0
1,860,583	-				+0.8
1,860,583	-				+0.4
1,860,586	+				+0.5
1,860,621	-				+0.4
1,860,653	-				+0.3
1,860,661	+				+0.9
1,860,733	+				+1.0
1,860,733	+				-0.6
1,860,734	-				+0.7
1,860,734	-				+1.4
1,860,744	+				+1.2
1,860,745	-				+0.5
1,860,745	-				-0.4
1,860,745	-				+0.9
1,860,759	-				+0.2
1,860,769	-				+0.6
1,860,769	-				-1.2
1,860,769	-				-0.2
1,860,769	-				+0.0
1,860,816	+				-0.7
1,860,855	-	nudF	MCAODC_09325	0.15	-0.1
1,860,865	-	nudF	MCAODC_09325	0.16	-0.8
1,860,881	+	nudF	MCAODC_09325	0.19	+1.3
1,860,881	+	nudF	MCAODC_09325	0.19	+0.3
1,860,882	-	nudF	MCAODC_09325	0.19	-2.3
1,861,010	-	nudF	MCAODC_09325	0.39	+0.7
1,861,018	-	nudF	MCAODC_09325	0.40	+0.7
1,861,145	+	nudF	MCAODC_09325	0.61	-0.2
1,861,146	-	nudF	MCAODC_09325	0.61	-0.6
1,861,191	+	nudF	MCAODC_09325	0.68	+0.0
1,861,191	+	nudF	MCAODC_09325	0.68	-0.8
1,861,191	+	nudF	MCAODC_09325	0.68	+1.0
1,861,192	-	nudF	MCAODC_09325	0.68	-0.5
1,861,192	-	nudF	MCAODC_09325	0.68	+1.3
1,861,257	+	nudF	MCAODC_09325	0.78	-0.4
1,861,257	+	nudF	MCAODC_09325	0.78	-0.8
1,861,258	-	nudF	MCAODC_09325	0.79	-0.4
1,861,258	-	nudF	MCAODC_09325	0.79	-0.6
1,861,274	+	nudF	MCAODC_09325	0.81	+0.6
1,861,274	+	nudF	MCAODC_09325	0.81	+0.1
1,861,291	+	nudF	MCAODC_09325	0.84	+0.2
1,861,291	+	nudF	MCAODC_09325	0.84	+1.3
1,861,292	-	nudF	MCAODC_09325	0.84	-2.1
1,861,292	-	nudF	MCAODC_09325	0.84	+0.4
1,861,301	+	nudF	MCAODC_09325	0.85	+0.2
1,861,403	-				-0.0
1,861,403	-				+0.6
1,861,499	+	yqiB	MCAODC_09330	0.25	-0.2
1,861,500	-	yqiB	MCAODC_09330	0.25	-0.2
1,861,504	+	yqiB	MCAODC_09330	0.26	-0.6
1,861,505	-	yqiB	MCAODC_09330	0.26	+0.3