Strain Fitness in Escherichia coli ECRC101 around MCAODC_08530

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmurA and sfsB are separated by 47 nucleotidessfsB and ispB are separated by 228 nucleotides MCAODC_08525: murA - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,707,348 to 1,708,607 murA MCAODC_08530: sfsB - DNA-binding transcriptional regulator SfsB, at 1,708,655 to 1,708,933 sfsB MCAODC_08535: ispB - octaprenyl diphosphate synthase, at 1,709,162 to 1,710,133 ispB Position (kb) 1708 1709Strain fitness (log2 ratio) -2 -1 0 1at 1708.606 kb on - strandat 1708.674 kb on + strandat 1708.674 kb on + strandat 1708.674 kb on + strandat 1708.674 kb on + strandat 1708.675 kb on - strandat 1708.679 kb on - strandat 1708.679 kb on - strandat 1708.777 kb on + strand, within sfsBat 1708.777 kb on + strand, within sfsBat 1708.925 kb on - strandat 1708.925 kb on - strandat 1708.949 kb on - strandat 1708.954 kb on - strandat 1708.994 kb on + strandat 1708.995 kb on - strandat 1708.996 kb on + strandat 1709.032 kb on - strandat 1709.065 kb on + strandat 1709.065 kb on + strandat 1709.065 kb on + strandat 1709.065 kb on + strandat 1709.120 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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1,708,606 - +0.5
1,708,674 + +0.1
1,708,674 + -2.0
1,708,674 + +0.1
1,708,674 + +0.6
1,708,675 - +1.5
1,708,679 - +0.7
1,708,679 - -0.4
1,708,777 + sfsB MCAODC_08530 0.44 +0.6
1,708,777 + sfsB MCAODC_08530 0.44 +0.6
1,708,925 - -0.1
1,708,925 - +0.2
1,708,949 - +0.6
1,708,954 - -0.3
1,708,994 + +0.1
1,708,995 - -0.6
1,708,996 + +0.6
1,709,032 - -2.3
1,709,065 + +0.8
1,709,065 + +1.0
1,709,065 + -2.4
1,709,065 + +0.2
1,709,120 - +0.4

Or see this region's nucleotide sequence