Strain Fitness in Escherichia coli ECRC101 around MCAODC_08250

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmreB and mreC are separated by 65 nucleotidesmreC and mreD overlap by 1 nucleotidesmreD and yhdE are separated by 8 nucleotides MCAODC_08245: mreB - rod shape-determining protein MreB, at 1,650,148 to 1,651,191 mreB MCAODC_08250: mreC - rod shape-determining protein MreC, at 1,651,257 to 1,652,360 mreC MCAODC_08255: mreD - rod shape-determining protein MreD, at 1,652,360 to 1,652,848 mreD MCAODC_08260: yhdE - nucleoside triphosphate pyrophosphatase YhdE, at 1,652,857 to 1,653,450 yhdE Position (kb) 1651 1652 1653Strain fitness (log2 ratio) -2 -1 0 1at 1651.189 kb on + strandat 1651.189 kb on + strandat 1651.245 kb on + strandat 1652.846 kb on + strandat 1652.846 kb on + strandat 1652.846 kb on + strandat 1652.856 kb on + strandat 1652.857 kb on - strandat 1652.857 kb on - strandat 1652.870 kb on - strandat 1652.870 kb on - strandat 1652.873 kb on + strandat 1652.873 kb on + strandat 1652.874 kb on - strandat 1652.903 kb on + strandat 1652.904 kb on - strandat 1652.934 kb on + strand, within yhdEat 1652.934 kb on + strand, within yhdEat 1652.934 kb on + strand, within yhdEat 1652.934 kb on + strand, within yhdEat 1652.934 kb on + strand, within yhdEat 1652.940 kb on + strand, within yhdEat 1652.986 kb on + strand, within yhdEat 1652.986 kb on + strand, within yhdEat 1652.986 kb on + strand, within yhdEat 1652.986 kb on + strand, within yhdEat 1652.987 kb on - strand, within yhdEat 1652.987 kb on - strand, within yhdEat 1653.070 kb on - strand, within yhdEat 1653.070 kb on - strand, within yhdEat 1653.144 kb on - strand, within yhdEat 1653.291 kb on + strand, within yhdEat 1653.292 kb on - strand, within yhdEat 1653.304 kb on + strand, within yhdEat 1653.305 kb on - strand, within yhdEat 1653.310 kb on - strand, within yhdEat 1653.345 kb on - strand, within yhdEat 1653.355 kb on + strand, within yhdEat 1653.355 kb on + strand, within yhdEat 1653.356 kb on - strand, within yhdEat 1653.356 kb on - strand, within yhdE

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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1,651,189 + -0.0
1,651,189 + +1.0
1,651,245 + +0.9
1,652,846 + -0.8
1,652,846 + -0.5
1,652,846 + -0.8
1,652,856 + -0.4
1,652,857 - +0.3
1,652,857 - +0.8
1,652,870 - -0.0
1,652,870 - -0.4
1,652,873 + -0.3
1,652,873 + +0.6
1,652,874 - +1.6
1,652,903 + +0.7
1,652,904 - +0.2
1,652,934 + yhdE MCAODC_08260 0.13 +0.2
1,652,934 + yhdE MCAODC_08260 0.13 +0.7
1,652,934 + yhdE MCAODC_08260 0.13 -0.0
1,652,934 + yhdE MCAODC_08260 0.13 +0.0
1,652,934 + yhdE MCAODC_08260 0.13 -1.3
1,652,940 + yhdE MCAODC_08260 0.14 +0.5
1,652,986 + yhdE MCAODC_08260 0.22 +1.4
1,652,986 + yhdE MCAODC_08260 0.22 +0.1
1,652,986 + yhdE MCAODC_08260 0.22 -0.1
1,652,986 + yhdE MCAODC_08260 0.22 +0.9
1,652,987 - yhdE MCAODC_08260 0.22 -2.5
1,652,987 - yhdE MCAODC_08260 0.22 +0.8
1,653,070 - yhdE MCAODC_08260 0.36 -0.1
1,653,070 - yhdE MCAODC_08260 0.36 +0.1
1,653,144 - yhdE MCAODC_08260 0.48 +0.1
1,653,291 + yhdE MCAODC_08260 0.73 +0.5
1,653,292 - yhdE MCAODC_08260 0.73 +0.4
1,653,304 + yhdE MCAODC_08260 0.75 -0.8
1,653,305 - yhdE MCAODC_08260 0.75 -0.4
1,653,310 - yhdE MCAODC_08260 0.76 +1.5
1,653,345 - yhdE MCAODC_08260 0.82 +0.6
1,653,355 + yhdE MCAODC_08260 0.84 +0.2
1,653,355 + yhdE MCAODC_08260 0.84 +0.5
1,653,356 - yhdE MCAODC_08260 0.84 +0.6
1,653,356 - yhdE MCAODC_08260 0.84 +0.4

Or see this region's nucleotide sequence