Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hybA1 and melB are separated by 10 nucleotides melB and yesN are separated by 225 nucleotides
MCAODC_06405: hybA1 - Non-reducing end beta-L-arabinofuranosidase, at 1,293,839 to 1,295,809
hybA1
MCAODC_06410: melB - MFS transporter, at 1,295,820 to 1,297,220
melB
MCAODC_06415: yesN - AraC family transcriptional regulator, at 1,297,446 to 1,298,261
yesN
Position (kb) 1295
1296
1297
1298 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1294.839 kb on + strand, within hybA1 at 1294.839 kb on + strand, within hybA1 at 1294.840 kb on - strand, within hybA1 at 1294.891 kb on + strand, within hybA1 at 1294.891 kb on + strand, within hybA1 at 1294.892 kb on - strand, within hybA1 at 1294.892 kb on - strand, within hybA1 at 1294.892 kb on - strand, within hybA1 at 1294.892 kb on - strand, within hybA1 at 1294.893 kb on + strand, within hybA1 at 1294.893 kb on + strand, within hybA1 at 1294.893 kb on + strand, within hybA1 at 1294.893 kb on + strand, within hybA1 at 1294.893 kb on + strand, within hybA1 at 1294.893 kb on + strand, within hybA1 at 1294.893 kb on + strand, within hybA1 at 1294.893 kb on + strand, within hybA1 at 1294.894 kb on - strand, within hybA1 at 1294.894 kb on - strand, within hybA1 at 1294.894 kb on - strand, within hybA1 at 1294.894 kb on - strand, within hybA1 at 1294.894 kb on - strand, within hybA1 at 1294.894 kb on - strand, within hybA1 at 1294.894 kb on - strand, within hybA1 at 1294.894 kb on - strand, within hybA1 at 1294.895 kb on + strand, within hybA1 at 1294.896 kb on - strand, within hybA1 at 1294.896 kb on - strand, within hybA1 at 1294.896 kb on - strand, within hybA1 at 1294.896 kb on - strand, within hybA1 at 1294.913 kb on - strand, within hybA1 at 1294.961 kb on + strand, within hybA1 at 1295.094 kb on + strand, within hybA1 at 1295.094 kb on + strand, within hybA1 at 1295.094 kb on + strand, within hybA1 at 1295.095 kb on - strand, within hybA1 at 1295.130 kb on + strand, within hybA1 at 1295.143 kb on - strand, within hybA1 at 1295.143 kb on - strand, within hybA1 at 1295.145 kb on + strand, within hybA1 at 1295.145 kb on + strand, within hybA1 at 1295.145 kb on + strand, within hybA1 at 1295.146 kb on - strand, within hybA1 at 1295.178 kb on + strand, within hybA1 at 1295.179 kb on - strand, within hybA1 at 1295.179 kb on - strand, within hybA1 at 1295.196 kb on + strand, within hybA1 at 1295.220 kb on + strand, within hybA1 at 1295.231 kb on + strand, within hybA1 at 1295.231 kb on + strand, within hybA1 at 1295.271 kb on - strand, within hybA1 at 1295.275 kb on + strand, within hybA1 at 1295.275 kb on + strand, within hybA1 at 1295.275 kb on + strand, within hybA1 at 1295.276 kb on - strand, within hybA1 at 1295.276 kb on - strand, within hybA1 at 1295.294 kb on + strand, within hybA1 at 1295.294 kb on + strand, within hybA1 at 1295.295 kb on - strand, within hybA1 at 1295.295 kb on - strand, within hybA1 at 1295.305 kb on + strand, within hybA1 at 1295.401 kb on - strand, within hybA1 at 1295.451 kb on - strand, within hybA1 at 1295.460 kb on + strand, within hybA1 at 1295.460 kb on + strand, within hybA1 at 1295.461 kb on - strand, within hybA1 at 1295.461 kb on - strand, within hybA1 at 1295.510 kb on + strand, within hybA1 at 1295.782 kb on + strand at 1295.783 kb on - strand at 1295.829 kb on + strand at 1295.829 kb on + strand at 1295.830 kb on - strand at 1295.852 kb on + strand at 1295.856 kb on + strand at 1295.856 kb on + strand at 1295.856 kb on + strand at 1295.856 kb on + strand at 1295.856 kb on + strand at 1295.857 kb on - strand at 1295.857 kb on - strand at 1295.857 kb on - strand at 1295.857 kb on - strand at 1295.857 kb on - strand at 1295.857 kb on - strand at 1295.857 kb on - strand at 1295.870 kb on + strand at 1295.871 kb on - strand at 1295.934 kb on + strand at 1295.999 kb on - strand, within melB at 1296.099 kb on + strand, within melB at 1296.099 kb on + strand, within melB at 1296.100 kb on - strand, within melB at 1296.100 kb on - strand, within melB at 1296.100 kb on - strand, within melB at 1296.100 kb on - strand, within melB at 1296.100 kb on - strand, within melB at 1296.122 kb on - strand, within melB at 1296.280 kb on + strand, within melB at 1296.280 kb on + strand, within melB at 1296.280 kb on + strand, within melB at 1296.281 kb on - strand, within melB at 1296.281 kb on - strand, within melB at 1296.284 kb on - strand, within melB at 1296.284 kb on - strand, within melB at 1296.399 kb on + strand, within melB at 1296.399 kb on + strand, within melB at 1296.399 kb on + strand, within melB at 1296.406 kb on + strand, within melB at 1296.407 kb on - strand, within melB at 1296.407 kb on - strand, within melB at 1296.407 kb on - strand, within melB at 1296.407 kb on - strand, within melB at 1296.407 kb on - strand, within melB at 1296.410 kb on + strand, within melB at 1296.410 kb on + strand, within melB at 1296.410 kb on + strand, within melB at 1296.410 kb on + strand, within melB at 1296.411 kb on - strand, within melB at 1296.418 kb on + strand, within melB at 1296.418 kb on + strand, within melB at 1296.418 kb on + strand, within melB at 1296.418 kb on + strand, within melB at 1296.418 kb on + strand, within melB at 1296.419 kb on - strand, within melB at 1296.419 kb on - strand, within melB at 1296.419 kb on - strand, within melB at 1296.419 kb on - strand, within melB at 1296.419 kb on - strand, within melB at 1296.419 kb on - strand, within melB at 1296.419 kb on - strand, within melB at 1296.422 kb on + strand, within melB at 1296.422 kb on + strand, within melB at 1296.422 kb on + strand, within melB at 1296.422 kb on + strand, within melB at 1296.422 kb on + strand, within melB at 1296.422 kb on + strand, within melB at 1296.422 kb on + strand, within melB at 1296.422 kb on + strand, within melB at 1296.422 kb on + strand, within melB at 1296.422 kb on + strand, within melB at 1296.422 kb on + strand, within melB at 1296.422 kb on + strand, within melB at 1296.422 kb on + strand, within melB at 1296.422 kb on + strand, within melB at 1296.423 kb on - strand, within melB at 1296.423 kb on - strand, within melB at 1296.423 kb on - strand, within melB at 1296.423 kb on - strand, within melB at 1296.423 kb on - strand, within melB at 1296.423 kb on - strand, within melB at 1296.423 kb on - strand, within melB at 1296.423 kb on - strand, within melB at 1296.423 kb on - strand, within melB at 1296.423 kb on - strand, within melB at 1296.423 kb on - strand, within melB at 1296.423 kb on - strand, within melB at 1296.424 kb on + strand, within melB at 1296.424 kb on + strand, within melB at 1296.425 kb on - strand, within melB at 1296.425 kb on - strand, within melB at 1296.425 kb on - strand, within melB at 1296.425 kb on - strand, within melB at 1296.425 kb on - strand, within melB at 1296.425 kb on - strand, within melB at 1296.425 kb on - strand, within melB at 1296.615 kb on + strand, within melB at 1296.670 kb on - strand, within melB at 1296.670 kb on - strand, within melB at 1296.681 kb on + strand, within melB at 1296.791 kb on - strand, within melB at 1296.832 kb on + strand, within melB at 1296.832 kb on + strand, within melB at 1296.832 kb on + strand, within melB at 1296.832 kb on + strand, within melB at 1296.832 kb on + strand, within melB at 1296.832 kb on + strand, within melB at 1296.832 kb on + strand, within melB at 1296.833 kb on - strand, within melB at 1296.928 kb on - strand, within melB at 1297.138 kb on + strand at 1297.156 kb on - strand at 1297.162 kb on - strand at 1297.162 kb on - strand at 1297.200 kb on - strand at 1297.211 kb on + strand at 1297.220 kb on + strand at 1297.220 kb on + strand at 1297.220 kb on + strand at 1297.221 kb on - strand at 1297.221 kb on - strand at 1297.224 kb on + strand at 1297.252 kb on - strand at 1297.553 kb on + strand, within yesN at 1297.628 kb on - strand, within yesN at 1297.631 kb on - strand, within yesN at 1297.631 kb on - strand, within yesN at 1297.739 kb on + strand, within yesN at 1297.856 kb on + strand, within yesN at 1297.968 kb on + strand, within yesN at 1297.969 kb on - strand, within yesN at 1297.969 kb on - strand, within yesN at 1298.118 kb on - strand, within yesN at 1298.118 kb on - strand, within yesN at 1298.175 kb on + strand, within yesN
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 1,294,839 + hybA1 MCAODC_06405 0.51 -0.1 1,294,839 + hybA1 MCAODC_06405 0.51 +0.6 1,294,840 - hybA1 MCAODC_06405 0.51 -1.0 1,294,891 + hybA1 MCAODC_06405 0.53 +0.6 1,294,891 + hybA1 MCAODC_06405 0.53 -0.2 1,294,892 - hybA1 MCAODC_06405 0.53 +0.1 1,294,892 - hybA1 MCAODC_06405 0.53 +0.4 1,294,892 - hybA1 MCAODC_06405 0.53 -0.4 1,294,892 - hybA1 MCAODC_06405 0.53 -0.7 1,294,893 + hybA1 MCAODC_06405 0.53 -0.5 1,294,893 + hybA1 MCAODC_06405 0.53 +0.2 1,294,893 + hybA1 MCAODC_06405 0.53 +0.2 1,294,893 + hybA1 MCAODC_06405 0.53 +0.7 1,294,893 + hybA1 MCAODC_06405 0.53 -0.6 1,294,893 + hybA1 MCAODC_06405 0.53 +0.5 1,294,893 + hybA1 MCAODC_06405 0.53 +1.8 1,294,893 + hybA1 MCAODC_06405 0.53 -1.2 1,294,894 - hybA1 MCAODC_06405 0.54 +0.9 1,294,894 - hybA1 MCAODC_06405 0.54 +0.1 1,294,894 - hybA1 MCAODC_06405 0.54 -0.1 1,294,894 - hybA1 MCAODC_06405 0.54 +0.5 1,294,894 - hybA1 MCAODC_06405 0.54 -0.0 1,294,894 - hybA1 MCAODC_06405 0.54 +0.2 1,294,894 - hybA1 MCAODC_06405 0.54 -0.6 1,294,894 - hybA1 MCAODC_06405 0.54 +0.2 1,294,895 + hybA1 MCAODC_06405 0.54 +0.5 1,294,896 - hybA1 MCAODC_06405 0.54 -0.5 1,294,896 - hybA1 MCAODC_06405 0.54 +0.6 1,294,896 - hybA1 MCAODC_06405 0.54 -1.2 1,294,896 - hybA1 MCAODC_06405 0.54 -1.4 1,294,913 - hybA1 MCAODC_06405 0.54 +0.2 1,294,961 + hybA1 MCAODC_06405 0.57 -0.5 1,295,094 + hybA1 MCAODC_06405 0.64 -0.1 1,295,094 + hybA1 MCAODC_06405 0.64 +0.1 1,295,094 + hybA1 MCAODC_06405 0.64 +0.0 1,295,095 - hybA1 MCAODC_06405 0.64 +0.7 1,295,130 + hybA1 MCAODC_06405 0.65 +0.5 1,295,143 - hybA1 MCAODC_06405 0.66 +0.1 1,295,143 - hybA1 MCAODC_06405 0.66 -0.1 1,295,145 + hybA1 MCAODC_06405 0.66 +3.2 1,295,145 + hybA1 MCAODC_06405 0.66 -0.0 1,295,145 + hybA1 MCAODC_06405 0.66 -0.0 1,295,146 - hybA1 MCAODC_06405 0.66 -0.9 1,295,178 + hybA1 MCAODC_06405 0.68 +0.4 1,295,179 - hybA1 MCAODC_06405 0.68 +0.6 1,295,179 - hybA1 MCAODC_06405 0.68 +0.2 1,295,196 + hybA1 MCAODC_06405 0.69 -1.4 1,295,220 + hybA1 MCAODC_06405 0.70 -0.4 1,295,231 + hybA1 MCAODC_06405 0.71 +1.4 1,295,231 + hybA1 MCAODC_06405 0.71 -0.3 1,295,271 - hybA1 MCAODC_06405 0.73 +0.0 1,295,275 + hybA1 MCAODC_06405 0.73 +0.4 1,295,275 + hybA1 MCAODC_06405 0.73 +0.8 1,295,275 + hybA1 MCAODC_06405 0.73 -0.1 1,295,276 - hybA1 MCAODC_06405 0.73 +0.8 1,295,276 - hybA1 MCAODC_06405 0.73 -0.5 1,295,294 + hybA1 MCAODC_06405 0.74 +0.1 1,295,294 + hybA1 MCAODC_06405 0.74 -1.7 1,295,295 - hybA1 MCAODC_06405 0.74 +0.3 1,295,295 - hybA1 MCAODC_06405 0.74 +0.2 1,295,305 + hybA1 MCAODC_06405 0.74 +0.5 1,295,401 - hybA1 MCAODC_06405 0.79 +0.3 1,295,451 - hybA1 MCAODC_06405 0.82 -0.2 1,295,460 + hybA1 MCAODC_06405 0.82 -2.9 1,295,460 + hybA1 MCAODC_06405 0.82 +0.2 1,295,461 - hybA1 MCAODC_06405 0.82 -0.2 1,295,461 - hybA1 MCAODC_06405 0.82 -0.3 1,295,510 + hybA1 MCAODC_06405 0.85 -0.4 1,295,782 + -0.5 1,295,783 - +0.7 1,295,829 + +0.8 1,295,829 + -0.8 1,295,830 - +0.6 1,295,852 + -2.6 1,295,856 + +0.6 1,295,856 + -0.0 1,295,856 + +0.1 1,295,856 + +1.2 1,295,856 + +0.5 1,295,857 - +0.7 1,295,857 - +0.6 1,295,857 - +0.4 1,295,857 - -0.3 1,295,857 - +0.7 1,295,857 - +0.3 1,295,857 - -0.6 1,295,870 + -0.0 1,295,871 - +1.5 1,295,934 + +1.7 1,295,999 - melB MCAODC_06410 0.13 +0.1 1,296,099 + melB MCAODC_06410 0.20 -1.0 1,296,099 + melB MCAODC_06410 0.20 -1.6 1,296,100 - melB MCAODC_06410 0.20 -0.1 1,296,100 - melB MCAODC_06410 0.20 -0.9 1,296,100 - melB MCAODC_06410 0.20 -0.3 1,296,100 - melB MCAODC_06410 0.20 +0.7 1,296,100 - melB MCAODC_06410 0.20 -1.1 1,296,122 - melB MCAODC_06410 0.22 +0.8 1,296,280 + melB MCAODC_06410 0.33 -0.4 1,296,280 + melB MCAODC_06410 0.33 -0.7 1,296,280 + melB MCAODC_06410 0.33 -1.1 1,296,281 - melB MCAODC_06410 0.33 -1.6 1,296,281 - melB MCAODC_06410 0.33 +0.2 1,296,284 - melB MCAODC_06410 0.33 -2.1 1,296,284 - melB MCAODC_06410 0.33 -0.5 1,296,399 + melB MCAODC_06410 0.41 +0.4 1,296,399 + melB MCAODC_06410 0.41 +0.1 1,296,399 + melB MCAODC_06410 0.41 -1.3 1,296,406 + melB MCAODC_06410 0.42 +0.2 1,296,407 - melB MCAODC_06410 0.42 +1.3 1,296,407 - melB MCAODC_06410 0.42 +0.2 1,296,407 - melB MCAODC_06410 0.42 +0.5 1,296,407 - melB MCAODC_06410 0.42 +0.1 1,296,407 - melB MCAODC_06410 0.42 +0.0 1,296,410 + melB MCAODC_06410 0.42 -0.5 1,296,410 + melB MCAODC_06410 0.42 -0.7 1,296,410 + melB MCAODC_06410 0.42 +0.6 1,296,410 + melB MCAODC_06410 0.42 -2.0 1,296,411 - melB MCAODC_06410 0.42 -1.7 1,296,418 + melB MCAODC_06410 0.43 +1.2 1,296,418 + melB MCAODC_06410 0.43 -0.1 1,296,418 + melB MCAODC_06410 0.43 -0.2 1,296,418 + melB MCAODC_06410 0.43 +0.1 1,296,418 + melB MCAODC_06410 0.43 +0.3 1,296,419 - melB MCAODC_06410 0.43 +0.3 1,296,419 - melB MCAODC_06410 0.43 -0.3 1,296,419 - melB MCAODC_06410 0.43 +0.6 1,296,419 - melB MCAODC_06410 0.43 +1.8 1,296,419 - melB MCAODC_06410 0.43 +0.0 1,296,419 - melB MCAODC_06410 0.43 +0.9 1,296,419 - melB MCAODC_06410 0.43 -0.4 1,296,422 + melB MCAODC_06410 0.43 +1.4 1,296,422 + melB MCAODC_06410 0.43 -0.2 1,296,422 + melB MCAODC_06410 0.43 -1.3 1,296,422 + melB MCAODC_06410 0.43 +0.4 1,296,422 + melB MCAODC_06410 0.43 +0.0 1,296,422 + melB MCAODC_06410 0.43 -0.1 1,296,422 + melB MCAODC_06410 0.43 -0.7 1,296,422 + melB MCAODC_06410 0.43 -0.4 1,296,422 + melB MCAODC_06410 0.43 -0.1 1,296,422 + melB MCAODC_06410 0.43 +0.3 1,296,422 + melB MCAODC_06410 0.43 +0.3 1,296,422 + melB MCAODC_06410 0.43 +0.6 1,296,422 + melB MCAODC_06410 0.43 -0.6 1,296,422 + melB MCAODC_06410 0.43 +0.7 1,296,423 - melB MCAODC_06410 0.43 +2.2 1,296,423 - melB MCAODC_06410 0.43 -0.0 1,296,423 - melB MCAODC_06410 0.43 -0.1 1,296,423 - melB MCAODC_06410 0.43 -0.6 1,296,423 - melB MCAODC_06410 0.43 -0.5 1,296,423 - melB MCAODC_06410 0.43 +1.2 1,296,423 - melB MCAODC_06410 0.43 -0.3 1,296,423 - melB MCAODC_06410 0.43 -0.2 1,296,423 - melB MCAODC_06410 0.43 -3.0 1,296,423 - melB MCAODC_06410 0.43 +0.4 1,296,423 - melB MCAODC_06410 0.43 -0.4 1,296,423 - melB MCAODC_06410 0.43 -0.0 1,296,424 + melB MCAODC_06410 0.43 +0.3 1,296,424 + melB MCAODC_06410 0.43 -0.1 1,296,425 - melB MCAODC_06410 0.43 -1.0 1,296,425 - melB MCAODC_06410 0.43 +0.4 1,296,425 - melB MCAODC_06410 0.43 -0.0 1,296,425 - melB MCAODC_06410 0.43 +0.4 1,296,425 - melB MCAODC_06410 0.43 +0.3 1,296,425 - melB MCAODC_06410 0.43 -0.2 1,296,425 - melB MCAODC_06410 0.43 -0.7 1,296,615 + melB MCAODC_06410 0.57 -0.7 1,296,670 - melB MCAODC_06410 0.61 +0.7 1,296,670 - melB MCAODC_06410 0.61 -0.4 1,296,681 + melB MCAODC_06410 0.61 +1.7 1,296,791 - melB MCAODC_06410 0.69 -0.2 1,296,832 + melB MCAODC_06410 0.72 +0.3 1,296,832 + melB MCAODC_06410 0.72 +0.3 1,296,832 + melB MCAODC_06410 0.72 -0.4 1,296,832 + melB MCAODC_06410 0.72 +0.3 1,296,832 + melB MCAODC_06410 0.72 +1.6 1,296,832 + melB MCAODC_06410 0.72 +0.3 1,296,832 + melB MCAODC_06410 0.72 +0.3 1,296,833 - melB MCAODC_06410 0.72 +0.1 1,296,928 - melB MCAODC_06410 0.79 +0.1 1,297,138 + +0.2 1,297,156 - +0.5 1,297,162 - +1.2 1,297,162 - +0.8 1,297,200 - +0.4 1,297,211 + +0.4 1,297,220 + +1.0 1,297,220 + -0.1 1,297,220 + -1.0 1,297,221 - +1.7 1,297,221 - +1.6 1,297,224 + +0.4 1,297,252 - +0.7 1,297,553 + yesN MCAODC_06415 0.13 +0.6 1,297,628 - yesN MCAODC_06415 0.22 +0.3 1,297,631 - yesN MCAODC_06415 0.23 -0.4 1,297,631 - yesN MCAODC_06415 0.23 +2.6 1,297,739 + yesN MCAODC_06415 0.36 -1.0 1,297,856 + yesN MCAODC_06415 0.50 +1.1 1,297,968 + yesN MCAODC_06415 0.64 -1.2 1,297,969 - yesN MCAODC_06415 0.64 -0.5 1,297,969 - yesN MCAODC_06415 0.64 -1.5 1,298,118 - yesN MCAODC_06415 0.82 +0.2 1,298,118 - yesN MCAODC_06415 0.82 +0.4 1,298,175 + yesN MCAODC_06415 0.89 -1.3
Or see this region's nucleotide sequence