Strain Fitness in Escherichia coli ECRC101 around MCAODC_05245

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrbsB and rbsC are separated by 24 nucleotidesrbsC and rbsA are separated by 4 nucleotides MCAODC_05240: rbsB - ribose ABC transporter substrate-binding protein RbsB, at 1,055,569 to 1,056,459 rbsB MCAODC_05245: rbsC - ribose ABC transporter permease, at 1,056,484 to 1,057,449 rbsC MCAODC_05250: rbsA - ribose ABC transporter ATP-binding protein RbsA, at 1,057,454 to 1,058,959 rbsA Position (kb) 1056 1057 1058Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1055.503 kb on + strandat 1055.503 kb on + strandat 1055.503 kb on + strandat 1055.503 kb on + strandat 1055.504 kb on - strandat 1055.505 kb on + strandat 1055.505 kb on + strandat 1055.506 kb on - strandat 1055.506 kb on - strandat 1055.508 kb on + strandat 1055.508 kb on + strandat 1055.509 kb on - strandat 1055.509 kb on - strandat 1055.509 kb on - strandat 1055.531 kb on + strandat 1055.531 kb on + strandat 1055.531 kb on + strandat 1055.531 kb on + strandat 1055.532 kb on - strandat 1055.532 kb on - strandat 1055.532 kb on - strandat 1055.532 kb on - strandat 1055.532 kb on - strandat 1055.532 kb on - strandat 1055.532 kb on - strandat 1055.532 kb on - strandat 1055.535 kb on + strandat 1055.535 kb on + strandat 1055.535 kb on + strandat 1055.535 kb on + strandat 1055.535 kb on + strandat 1055.535 kb on + strandat 1055.536 kb on - strandat 1055.536 kb on - strandat 1055.553 kb on + strandat 1055.571 kb on - strandat 1055.578 kb on - strandat 1055.603 kb on + strandat 1055.608 kb on - strandat 1055.637 kb on + strandat 1055.637 kb on + strandat 1055.638 kb on - strandat 1055.699 kb on - strand, within rbsBat 1055.736 kb on + strand, within rbsBat 1055.769 kb on + strand, within rbsBat 1055.827 kb on + strand, within rbsBat 1055.870 kb on - strand, within rbsBat 1055.923 kb on - strand, within rbsBat 1055.983 kb on - strand, within rbsBat 1056.041 kb on + strand, within rbsBat 1056.041 kb on + strand, within rbsBat 1056.041 kb on + strand, within rbsBat 1056.042 kb on - strand, within rbsBat 1056.042 kb on - strand, within rbsBat 1056.042 kb on - strand, within rbsBat 1056.042 kb on - strand, within rbsBat 1056.068 kb on - strand, within rbsBat 1056.068 kb on - strand, within rbsBat 1056.073 kb on - strand, within rbsBat 1056.168 kb on + strand, within rbsBat 1056.168 kb on + strand, within rbsBat 1056.168 kb on + strand, within rbsBat 1056.169 kb on - strand, within rbsBat 1056.169 kb on - strand, within rbsBat 1056.169 kb on - strand, within rbsBat 1056.173 kb on - strand, within rbsBat 1056.227 kb on - strand, within rbsBat 1056.290 kb on + strand, within rbsBat 1056.290 kb on + strand, within rbsBat 1056.291 kb on - strand, within rbsBat 1056.351 kb on + strand, within rbsBat 1056.351 kb on + strand, within rbsBat 1056.351 kb on + strand, within rbsBat 1056.351 kb on + strand, within rbsBat 1056.352 kb on - strand, within rbsBat 1056.352 kb on - strand, within rbsBat 1056.352 kb on - strand, within rbsBat 1056.415 kb on + strandat 1056.416 kb on - strandat 1056.459 kb on + strandat 1056.475 kb on + strandat 1056.486 kb on - strandat 1056.502 kb on + strandat 1056.503 kb on - strandat 1056.503 kb on - strandat 1056.551 kb on + strandat 1056.551 kb on + strandat 1056.551 kb on + strandat 1056.566 kb on - strandat 1056.582 kb on + strand, within rbsCat 1056.583 kb on - strand, within rbsCat 1056.602 kb on - strand, within rbsCat 1056.678 kb on + strand, within rbsCat 1056.678 kb on + strand, within rbsCat 1056.678 kb on + strand, within rbsCat 1056.679 kb on - strand, within rbsCat 1056.679 kb on - strand, within rbsCat 1056.679 kb on - strand, within rbsCat 1056.679 kb on - strand, within rbsCat 1056.679 kb on - strand, within rbsCat 1056.692 kb on + strand, within rbsCat 1056.693 kb on - strand, within rbsCat 1056.798 kb on + strand, within rbsCat 1056.799 kb on - strand, within rbsCat 1056.851 kb on + strand, within rbsCat 1056.851 kb on + strand, within rbsCat 1056.857 kb on + strand, within rbsCat 1056.857 kb on + strand, within rbsCat 1056.887 kb on + strand, within rbsCat 1056.887 kb on + strand, within rbsCat 1056.888 kb on - strand, within rbsCat 1056.987 kb on + strand, within rbsCat 1057.017 kb on + strand, within rbsCat 1057.017 kb on + strand, within rbsCat 1057.017 kb on + strand, within rbsCat 1057.018 kb on - strand, within rbsCat 1057.018 kb on - strand, within rbsCat 1057.018 kb on - strand, within rbsCat 1057.019 kb on + strand, within rbsCat 1057.019 kb on + strand, within rbsCat 1057.042 kb on + strand, within rbsCat 1057.053 kb on + strand, within rbsCat 1057.053 kb on + strand, within rbsCat 1057.054 kb on - strand, within rbsCat 1057.054 kb on - strand, within rbsCat 1057.094 kb on - strand, within rbsCat 1057.129 kb on + strand, within rbsCat 1057.130 kb on - strand, within rbsCat 1057.182 kb on + strand, within rbsCat 1057.182 kb on + strand, within rbsCat 1057.183 kb on - strand, within rbsCat 1057.183 kb on - strand, within rbsCat 1057.183 kb on - strand, within rbsCat 1057.313 kb on - strand, within rbsCat 1057.313 kb on - strand, within rbsCat 1057.317 kb on + strand, within rbsCat 1057.317 kb on + strand, within rbsCat 1057.317 kb on + strand, within rbsCat 1057.317 kb on + strand, within rbsCat 1057.318 kb on - strand, within rbsCat 1057.418 kb on + strandat 1057.474 kb on + strandat 1057.475 kb on - strandat 1057.499 kb on + strandat 1057.583 kb on + strandat 1057.583 kb on + strandat 1057.586 kb on + strandat 1057.586 kb on + strandat 1057.586 kb on + strandat 1057.587 kb on - strandat 1057.587 kb on - strandat 1057.587 kb on - strandat 1057.656 kb on + strand, within rbsAat 1057.656 kb on + strand, within rbsAat 1057.657 kb on - strand, within rbsAat 1057.657 kb on - strand, within rbsAat 1057.657 kb on - strand, within rbsAat 1057.657 kb on - strand, within rbsAat 1057.683 kb on - strand, within rbsAat 1057.693 kb on + strand, within rbsAat 1057.694 kb on - strand, within rbsAat 1057.826 kb on - strand, within rbsAat 1057.888 kb on - strand, within rbsAat 1057.919 kb on + strand, within rbsAat 1057.919 kb on + strand, within rbsAat 1057.920 kb on - strand, within rbsAat 1057.938 kb on - strand, within rbsAat 1057.938 kb on - strand, within rbsAat 1057.966 kb on + strand, within rbsAat 1057.966 kb on + strand, within rbsAat 1057.967 kb on - strand, within rbsAat 1057.968 kb on + strand, within rbsAat 1057.968 kb on + strand, within rbsAat 1057.968 kb on + strand, within rbsAat 1057.968 kb on + strand, within rbsAat 1057.968 kb on + strand, within rbsAat 1057.968 kb on + strand, within rbsAat 1057.968 kb on + strand, within rbsAat 1057.968 kb on + strand, within rbsAat 1057.968 kb on + strand, within rbsAat 1057.968 kb on + strand, within rbsAat 1057.969 kb on - strand, within rbsAat 1057.969 kb on - strand, within rbsAat 1057.969 kb on - strand, within rbsAat 1057.969 kb on - strand, within rbsAat 1057.969 kb on - strand, within rbsAat 1057.969 kb on - strand, within rbsAat 1057.969 kb on - strand, within rbsAat 1057.969 kb on - strand, within rbsAat 1057.969 kb on - strand, within rbsAat 1058.037 kb on + strand, within rbsAat 1058.037 kb on + strand, within rbsAat 1058.064 kb on + strand, within rbsAat 1058.065 kb on - strand, within rbsAat 1058.135 kb on + strand, within rbsAat 1058.140 kb on + strand, within rbsAat 1058.140 kb on + strand, within rbsAat 1058.141 kb on - strand, within rbsAat 1058.141 kb on - strand, within rbsAat 1058.195 kb on - strand, within rbsAat 1058.302 kb on + strand, within rbsAat 1058.303 kb on - strand, within rbsAat 1058.303 kb on - strand, within rbsAat 1058.371 kb on + strand, within rbsAat 1058.371 kb on + strand, within rbsAat 1058.371 kb on + strand, within rbsAat 1058.371 kb on + strand, within rbsAat 1058.371 kb on + strand, within rbsAat 1058.371 kb on + strand, within rbsAat 1058.371 kb on + strand, within rbsAat 1058.373 kb on + strand, within rbsAat 1058.373 kb on + strand, within rbsAat 1058.373 kb on + strand, within rbsAat 1058.373 kb on + strand, within rbsAat 1058.373 kb on + strand, within rbsAat 1058.373 kb on + strand, within rbsAat 1058.373 kb on + strand, within rbsAat 1058.373 kb on + strand, within rbsAat 1058.374 kb on - strand, within rbsAat 1058.374 kb on - strand, within rbsAat 1058.374 kb on - strand, within rbsAat 1058.374 kb on - strand, within rbsAat 1058.374 kb on - strand, within rbsAat 1058.374 kb on - strand, within rbsAat 1058.374 kb on - strand, within rbsAat 1058.374 kb on - strand, within rbsAat 1058.374 kb on - strand, within rbsAat 1058.374 kb on - strand, within rbsAat 1058.374 kb on - strand, within rbsAat 1058.374 kb on - strand, within rbsAat 1058.374 kb on - strand, within rbsA

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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1,055,503 + +0.3
1,055,503 + -0.2
1,055,503 + +0.4
1,055,503 + -0.5
1,055,504 - +0.6
1,055,505 + -0.6
1,055,505 + -0.4
1,055,506 - -0.3
1,055,506 - -0.2
1,055,508 + +0.2
1,055,508 + +0.5
1,055,509 - +1.1
1,055,509 - -0.5
1,055,509 - +0.4
1,055,531 + -0.9
1,055,531 + -1.1
1,055,531 + +0.0
1,055,531 + +0.2
1,055,532 - -0.1
1,055,532 - -0.8
1,055,532 - +0.2
1,055,532 - +0.7
1,055,532 - +0.9
1,055,532 - +1.3
1,055,532 - +0.0
1,055,532 - +0.0
1,055,535 + -0.9
1,055,535 + -0.1
1,055,535 + +1.1
1,055,535 + -1.3
1,055,535 + +0.5
1,055,535 + -0.2
1,055,536 - -1.0
1,055,536 - +0.4
1,055,553 + +0.7
1,055,571 - -4.9
1,055,578 - +1.8
1,055,603 + -0.2
1,055,608 - +2.2
1,055,637 + +0.7
1,055,637 + -0.2
1,055,638 - +0.4
1,055,699 - rbsB MCAODC_05240 0.15 -1.7
1,055,736 + rbsB MCAODC_05240 0.19 +0.1
1,055,769 + rbsB MCAODC_05240 0.22 +0.3
1,055,827 + rbsB MCAODC_05240 0.29 +1.2
1,055,870 - rbsB MCAODC_05240 0.34 -0.0
1,055,923 - rbsB MCAODC_05240 0.40 +0.2
1,055,983 - rbsB MCAODC_05240 0.46 +0.3
1,056,041 + rbsB MCAODC_05240 0.53 +0.0
1,056,041 + rbsB MCAODC_05240 0.53 +0.5
1,056,041 + rbsB MCAODC_05240 0.53 -0.5
1,056,042 - rbsB MCAODC_05240 0.53 +0.1
1,056,042 - rbsB MCAODC_05240 0.53 +0.5
1,056,042 - rbsB MCAODC_05240 0.53 -0.8
1,056,042 - rbsB MCAODC_05240 0.53 -0.1
1,056,068 - rbsB MCAODC_05240 0.56 -0.5
1,056,068 - rbsB MCAODC_05240 0.56 +0.5
1,056,073 - rbsB MCAODC_05240 0.57 -0.6
1,056,168 + rbsB MCAODC_05240 0.67 -0.0
1,056,168 + rbsB MCAODC_05240 0.67 +1.2
1,056,168 + rbsB MCAODC_05240 0.67 -0.5
1,056,169 - rbsB MCAODC_05240 0.67 -0.3
1,056,169 - rbsB MCAODC_05240 0.67 -1.3
1,056,169 - rbsB MCAODC_05240 0.67 +0.1
1,056,173 - rbsB MCAODC_05240 0.68 -1.4
1,056,227 - rbsB MCAODC_05240 0.74 +0.5
1,056,290 + rbsB MCAODC_05240 0.81 +0.6
1,056,290 + rbsB MCAODC_05240 0.81 -0.0
1,056,291 - rbsB MCAODC_05240 0.81 -0.1
1,056,351 + rbsB MCAODC_05240 0.88 -0.5
1,056,351 + rbsB MCAODC_05240 0.88 -0.5
1,056,351 + rbsB MCAODC_05240 0.88 +1.2
1,056,351 + rbsB MCAODC_05240 0.88 +1.6
1,056,352 - rbsB MCAODC_05240 0.88 -0.3
1,056,352 - rbsB MCAODC_05240 0.88 -0.4
1,056,352 - rbsB MCAODC_05240 0.88 -0.4
1,056,415 + -0.2
1,056,416 - -0.3
1,056,459 + -0.4
1,056,475 + +1.2
1,056,486 - +0.6
1,056,502 + +0.1
1,056,503 - -0.2
1,056,503 - +0.3
1,056,551 + -1.4
1,056,551 + +0.4
1,056,551 + +2.2
1,056,566 - -1.4
1,056,582 + rbsC MCAODC_05245 0.10 +0.5
1,056,583 - rbsC MCAODC_05245 0.10 -0.1
1,056,602 - rbsC MCAODC_05245 0.12 -0.8
1,056,678 + rbsC MCAODC_05245 0.20 +0.2
1,056,678 + rbsC MCAODC_05245 0.20 +0.2
1,056,678 + rbsC MCAODC_05245 0.20 -2.5
1,056,679 - rbsC MCAODC_05245 0.20 +1.1
1,056,679 - rbsC MCAODC_05245 0.20 -1.2
1,056,679 - rbsC MCAODC_05245 0.20 +1.2
1,056,679 - rbsC MCAODC_05245 0.20 +1.3
1,056,679 - rbsC MCAODC_05245 0.20 -0.7
1,056,692 + rbsC MCAODC_05245 0.22 +0.1
1,056,693 - rbsC MCAODC_05245 0.22 -1.7
1,056,798 + rbsC MCAODC_05245 0.33 +0.9
1,056,799 - rbsC MCAODC_05245 0.33 -0.6
1,056,851 + rbsC MCAODC_05245 0.38 -0.7
1,056,851 + rbsC MCAODC_05245 0.38 +0.2
1,056,857 + rbsC MCAODC_05245 0.39 -0.7
1,056,857 + rbsC MCAODC_05245 0.39 +0.5
1,056,887 + rbsC MCAODC_05245 0.42 -0.8
1,056,887 + rbsC MCAODC_05245 0.42 +0.5
1,056,888 - rbsC MCAODC_05245 0.42 -0.4
1,056,987 + rbsC MCAODC_05245 0.52 +0.7
1,057,017 + rbsC MCAODC_05245 0.55 -0.1
1,057,017 + rbsC MCAODC_05245 0.55 -1.1
1,057,017 + rbsC MCAODC_05245 0.55 +0.4
1,057,018 - rbsC MCAODC_05245 0.55 -0.2
1,057,018 - rbsC MCAODC_05245 0.55 +0.4
1,057,018 - rbsC MCAODC_05245 0.55 -0.1
1,057,019 + rbsC MCAODC_05245 0.55 -0.3
1,057,019 + rbsC MCAODC_05245 0.55 -0.7
1,057,042 + rbsC MCAODC_05245 0.58 -1.1
1,057,053 + rbsC MCAODC_05245 0.59 +0.9
1,057,053 + rbsC MCAODC_05245 0.59 +0.3
1,057,054 - rbsC MCAODC_05245 0.59 +0.4
1,057,054 - rbsC MCAODC_05245 0.59 +0.1
1,057,094 - rbsC MCAODC_05245 0.63 -0.4
1,057,129 + rbsC MCAODC_05245 0.67 +0.1
1,057,130 - rbsC MCAODC_05245 0.67 +0.7
1,057,182 + rbsC MCAODC_05245 0.72 -1.8
1,057,182 + rbsC MCAODC_05245 0.72 +0.5
1,057,183 - rbsC MCAODC_05245 0.72 -0.5
1,057,183 - rbsC MCAODC_05245 0.72 +0.5
1,057,183 - rbsC MCAODC_05245 0.72 -1.6
1,057,313 - rbsC MCAODC_05245 0.86 -0.4
1,057,313 - rbsC MCAODC_05245 0.86 -0.0
1,057,317 + rbsC MCAODC_05245 0.86 -0.5
1,057,317 + rbsC MCAODC_05245 0.86 -0.3
1,057,317 + rbsC MCAODC_05245 0.86 +0.5
1,057,317 + rbsC MCAODC_05245 0.86 -0.7
1,057,318 - rbsC MCAODC_05245 0.86 -0.6
1,057,418 + +0.3
1,057,474 + +0.3
1,057,475 - -0.2
1,057,499 + +0.1
1,057,583 + +0.7
1,057,583 + -2.2
1,057,586 + -0.3
1,057,586 + +0.1
1,057,586 + +0.8
1,057,587 - -0.3
1,057,587 - -0.4
1,057,587 - -0.1
1,057,656 + rbsA MCAODC_05250 0.13 -0.5
1,057,656 + rbsA MCAODC_05250 0.13 +0.9
1,057,657 - rbsA MCAODC_05250 0.13 -1.0
1,057,657 - rbsA MCAODC_05250 0.13 +0.1
1,057,657 - rbsA MCAODC_05250 0.13 +2.1
1,057,657 - rbsA MCAODC_05250 0.13 -0.3
1,057,683 - rbsA MCAODC_05250 0.15 +0.8
1,057,693 + rbsA MCAODC_05250 0.16 +1.1
1,057,694 - rbsA MCAODC_05250 0.16 +0.7
1,057,826 - rbsA MCAODC_05250 0.25 +0.2
1,057,888 - rbsA MCAODC_05250 0.29 -1.0
1,057,919 + rbsA MCAODC_05250 0.31 -0.9
1,057,919 + rbsA MCAODC_05250 0.31 -1.2
1,057,920 - rbsA MCAODC_05250 0.31 -1.0
1,057,938 - rbsA MCAODC_05250 0.32 +0.9
1,057,938 - rbsA MCAODC_05250 0.32 -0.0
1,057,966 + rbsA MCAODC_05250 0.34 +1.1
1,057,966 + rbsA MCAODC_05250 0.34 +0.1
1,057,967 - rbsA MCAODC_05250 0.34 +0.4
1,057,968 + rbsA MCAODC_05250 0.34 -0.2
1,057,968 + rbsA MCAODC_05250 0.34 +0.4
1,057,968 + rbsA MCAODC_05250 0.34 -1.1
1,057,968 + rbsA MCAODC_05250 0.34 +1.1
1,057,968 + rbsA MCAODC_05250 0.34 -0.4
1,057,968 + rbsA MCAODC_05250 0.34 +0.5
1,057,968 + rbsA MCAODC_05250 0.34 +0.4
1,057,968 + rbsA MCAODC_05250 0.34 -0.4
1,057,968 + rbsA MCAODC_05250 0.34 -1.1
1,057,968 + rbsA MCAODC_05250 0.34 -0.1
1,057,969 - rbsA MCAODC_05250 0.34 +0.5
1,057,969 - rbsA MCAODC_05250 0.34 +0.7
1,057,969 - rbsA MCAODC_05250 0.34 +0.4
1,057,969 - rbsA MCAODC_05250 0.34 -1.4
1,057,969 - rbsA MCAODC_05250 0.34 +0.8
1,057,969 - rbsA MCAODC_05250 0.34 +0.6
1,057,969 - rbsA MCAODC_05250 0.34 -1.4
1,057,969 - rbsA MCAODC_05250 0.34 +0.6
1,057,969 - rbsA MCAODC_05250 0.34 +0.9
1,058,037 + rbsA MCAODC_05250 0.39 +0.0
1,058,037 + rbsA MCAODC_05250 0.39 +0.2
1,058,064 + rbsA MCAODC_05250 0.41 +1.0
1,058,065 - rbsA MCAODC_05250 0.41 -0.8
1,058,135 + rbsA MCAODC_05250 0.45 +0.2
1,058,140 + rbsA MCAODC_05250 0.46 -0.8
1,058,140 + rbsA MCAODC_05250 0.46 +0.4
1,058,141 - rbsA MCAODC_05250 0.46 +0.2
1,058,141 - rbsA MCAODC_05250 0.46 +0.4
1,058,195 - rbsA MCAODC_05250 0.49 -0.2
1,058,302 + rbsA MCAODC_05250 0.56 -0.1
1,058,303 - rbsA MCAODC_05250 0.56 -0.1
1,058,303 - rbsA MCAODC_05250 0.56 -2.0
1,058,371 + rbsA MCAODC_05250 0.61 +0.2
1,058,371 + rbsA MCAODC_05250 0.61 -0.3
1,058,371 + rbsA MCAODC_05250 0.61 +0.5
1,058,371 + rbsA MCAODC_05250 0.61 -1.3
1,058,371 + rbsA MCAODC_05250 0.61 +0.9
1,058,371 + rbsA MCAODC_05250 0.61 +0.1
1,058,371 + rbsA MCAODC_05250 0.61 -0.2
1,058,373 + rbsA MCAODC_05250 0.61 -0.6
1,058,373 + rbsA MCAODC_05250 0.61 -0.8
1,058,373 + rbsA MCAODC_05250 0.61 -0.6
1,058,373 + rbsA MCAODC_05250 0.61 +0.3
1,058,373 + rbsA MCAODC_05250 0.61 +1.1
1,058,373 + rbsA MCAODC_05250 0.61 +0.3
1,058,373 + rbsA MCAODC_05250 0.61 +0.6
1,058,373 + rbsA MCAODC_05250 0.61 -2.6
1,058,374 - rbsA MCAODC_05250 0.61 -0.8
1,058,374 - rbsA MCAODC_05250 0.61 +1.4
1,058,374 - rbsA MCAODC_05250 0.61 +0.1
1,058,374 - rbsA MCAODC_05250 0.61 -0.5
1,058,374 - rbsA MCAODC_05250 0.61 +0.3
1,058,374 - rbsA MCAODC_05250 0.61 -0.7
1,058,374 - rbsA MCAODC_05250 0.61 -0.2
1,058,374 - rbsA MCAODC_05250 0.61 -0.6
1,058,374 - rbsA MCAODC_05250 0.61 +0.4
1,058,374 - rbsA MCAODC_05250 0.61 +0.3
1,058,374 - rbsA MCAODC_05250 0.61 +0.6
1,058,374 - rbsA MCAODC_05250 0.61 -0.1
1,058,374 - rbsA MCAODC_05250 0.61 -1.6

Or see this region's nucleotide sequence