Strain Fitness in Escherichia coli ECRC101 around MCAODC_03655

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjbH and MCAODC_03650 overlap by 1 nucleotidesMCAODC_03650 and MCAODC_03655 overlap by 4 nucleotidesMCAODC_03655 and yjbE are separated by 113 nucleotidesyjbE and pgi are separated by 512 nucleotides MCAODC_03645: yjbH - Uncharacterized lipoprotein YjbH, at 731,907 to 734,003 yjbH MCAODC_03650: MCAODC_03650 - Uncharacterized protein YjbG, at 734,003 to 734,740 _03650 MCAODC_03655: MCAODC_03655 - Lipoprotein yjbF, at 734,737 to 735,375 _03655 MCAODC_03660: yjbE - Uncharacterized protein YjbE, at 735,489 to 735,731 yjbE MCAODC_03675: pgi - glucose-6-phosphate isomerase, at 736,244 to 737,893 pgi Position (kb) 734 735 736Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 733.807 kb on + strandat 733.808 kb on - strandat 733.808 kb on - strandat 733.811 kb on - strandat 733.834 kb on + strandat 733.884 kb on + strandat 733.884 kb on + strandat 733.884 kb on + strandat 733.885 kb on - strandat 733.885 kb on - strandat 733.885 kb on - strandat 733.936 kb on + strandat 733.937 kb on - strandat 733.937 kb on - strandat 733.937 kb on - strandat 733.961 kb on + strandat 733.961 kb on + strandat 733.977 kb on + strandat 733.977 kb on + strandat 733.982 kb on + strandat 733.982 kb on + strandat 733.982 kb on + strandat 733.983 kb on - strandat 734.005 kb on - strandat 734.094 kb on + strand, within MCAODC_03650at 734.094 kb on + strand, within MCAODC_03650at 734.095 kb on - strand, within MCAODC_03650at 734.095 kb on - strand, within MCAODC_03650at 734.095 kb on - strand, within MCAODC_03650at 734.098 kb on + strand, within MCAODC_03650at 734.099 kb on - strand, within MCAODC_03650at 734.099 kb on - strand, within MCAODC_03650at 734.099 kb on - strand, within MCAODC_03650at 734.099 kb on - strand, within MCAODC_03650at 734.120 kb on + strand, within MCAODC_03650at 734.120 kb on + strand, within MCAODC_03650at 734.121 kb on - strand, within MCAODC_03650at 734.139 kb on + strand, within MCAODC_03650at 734.139 kb on + strand, within MCAODC_03650at 734.175 kb on + strand, within MCAODC_03650at 734.190 kb on + strand, within MCAODC_03650at 734.190 kb on + strand, within MCAODC_03650at 734.191 kb on - strand, within MCAODC_03650at 734.194 kb on + strand, within MCAODC_03650at 734.194 kb on + strand, within MCAODC_03650at 734.209 kb on + strand, within MCAODC_03650at 734.232 kb on + strand, within MCAODC_03650at 734.285 kb on - strand, within MCAODC_03650at 734.335 kb on - strand, within MCAODC_03650at 734.335 kb on - strand, within MCAODC_03650at 734.442 kb on - strand, within MCAODC_03650at 734.442 kb on - strand, within MCAODC_03650at 734.442 kb on - strand, within MCAODC_03650at 734.612 kb on + strand, within MCAODC_03650at 734.613 kb on - strand, within MCAODC_03650at 734.725 kb on + strandat 734.726 kb on - strandat 734.735 kb on - strandat 734.780 kb on + strandat 734.781 kb on - strandat 734.795 kb on + strandat 734.796 kb on - strandat 734.916 kb on + strand, within MCAODC_03655at 734.968 kb on + strand, within MCAODC_03655at 735.037 kb on - strand, within MCAODC_03655at 735.060 kb on + strand, within MCAODC_03655at 735.060 kb on + strand, within MCAODC_03655at 735.060 kb on + strand, within MCAODC_03655at 735.207 kb on + strand, within MCAODC_03655at 735.218 kb on + strand, within MCAODC_03655at 735.218 kb on + strand, within MCAODC_03655at 735.219 kb on - strand, within MCAODC_03655at 735.219 kb on - strand, within MCAODC_03655at 735.219 kb on - strand, within MCAODC_03655at 735.219 kb on - strand, within MCAODC_03655at 735.219 kb on - strand, within MCAODC_03655at 735.237 kb on + strand, within MCAODC_03655at 735.238 kb on - strand, within MCAODC_03655at 735.238 kb on - strand, within MCAODC_03655at 735.337 kb on + strandat 735.340 kb on + strandat 735.341 kb on - strandat 735.341 kb on - strandat 735.341 kb on - strandat 735.352 kb on - strandat 735.400 kb on - strandat 735.400 kb on - strandat 735.424 kb on + strandat 735.424 kb on + strandat 735.425 kb on - strandat 735.436 kb on + strandat 735.436 kb on + strandat 735.436 kb on + strandat 735.437 kb on - strandat 735.443 kb on - strandat 735.478 kb on + strandat 735.478 kb on + strandat 735.479 kb on - strandat 735.482 kb on + strandat 735.482 kb on + strandat 735.482 kb on + strandat 735.482 kb on + strandat 735.483 kb on - strandat 735.483 kb on - strandat 735.483 kb on - strandat 735.483 kb on - strandat 735.483 kb on - strandat 735.483 kb on - strandat 735.483 kb on - strandat 735.483 kb on - strandat 735.483 kb on - strandat 735.483 kb on - strandat 735.487 kb on + strandat 735.488 kb on - strandat 735.488 kb on - strandat 735.490 kb on + strandat 735.491 kb on - strandat 735.530 kb on + strand, within yjbEat 735.530 kb on + strand, within yjbEat 735.531 kb on - strand, within yjbEat 735.531 kb on - strand, within yjbEat 735.531 kb on - strand, within yjbEat 735.661 kb on - strand, within yjbEat 735.715 kb on + strandat 735.796 kb on - strandat 736.057 kb on + strandat 736.083 kb on + strandat 736.096 kb on + strandat 736.097 kb on - strandat 736.097 kb on - strandat 736.103 kb on + strandat 736.104 kb on - strandat 736.121 kb on + strandat 736.121 kb on + strandat 736.121 kb on + strandat 736.122 kb on - strandat 736.122 kb on - strandat 736.122 kb on - strandat 736.122 kb on - strandat 736.122 kb on - strandat 736.125 kb on + strandat 736.125 kb on + strandat 736.151 kb on - strandat 736.215 kb on + strandat 736.215 kb on + strandat 736.219 kb on + strandat 736.261 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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733,807 + +0.1
733,808 - -0.1
733,808 - +0.8
733,811 - +0.1
733,834 + -1.3
733,884 + -0.4
733,884 + +0.5
733,884 + -0.0
733,885 - +1.9
733,885 - +0.1
733,885 - +0.8
733,936 + -2.1
733,937 - -0.2
733,937 - +0.4
733,937 - +0.6
733,961 + +0.2
733,961 + -0.1
733,977 + -0.2
733,977 + -0.0
733,982 + -0.7
733,982 + +0.8
733,982 + -0.6
733,983 - +0.1
734,005 - -0.9
734,094 + MCAODC_03650 0.12 +1.4
734,094 + MCAODC_03650 0.12 -2.3
734,095 - MCAODC_03650 0.12 -0.8
734,095 - MCAODC_03650 0.12 +1.1
734,095 - MCAODC_03650 0.12 -0.5
734,098 + MCAODC_03650 0.13 +0.6
734,099 - MCAODC_03650 0.13 +1.3
734,099 - MCAODC_03650 0.13 +0.2
734,099 - MCAODC_03650 0.13 -1.1
734,099 - MCAODC_03650 0.13 +1.3
734,120 + MCAODC_03650 0.16 -0.0
734,120 + MCAODC_03650 0.16 -0.6
734,121 - MCAODC_03650 0.16 -0.2
734,139 + MCAODC_03650 0.18 -0.3
734,139 + MCAODC_03650 0.18 -1.2
734,175 + MCAODC_03650 0.23 -0.2
734,190 + MCAODC_03650 0.25 -1.1
734,190 + MCAODC_03650 0.25 -0.5
734,191 - MCAODC_03650 0.25 -0.7
734,194 + MCAODC_03650 0.26 -0.6
734,194 + MCAODC_03650 0.26 -0.0
734,209 + MCAODC_03650 0.28 +3.7
734,232 + MCAODC_03650 0.31 -0.3
734,285 - MCAODC_03650 0.38 +0.1
734,335 - MCAODC_03650 0.45 -0.3
734,335 - MCAODC_03650 0.45 -0.4
734,442 - MCAODC_03650 0.59 +0.3
734,442 - MCAODC_03650 0.59 +0.8
734,442 - MCAODC_03650 0.59 +1.1
734,612 + MCAODC_03650 0.83 +0.2
734,613 - MCAODC_03650 0.83 +0.2
734,725 + -0.2
734,726 - +0.6
734,735 - +1.8
734,780 + +0.8
734,781 - -0.2
734,795 + -0.6
734,796 - +0.1
734,916 + MCAODC_03655 0.28 +0.6
734,968 + MCAODC_03655 0.36 +0.5
735,037 - MCAODC_03655 0.47 -0.8
735,060 + MCAODC_03655 0.51 -0.4
735,060 + MCAODC_03655 0.51 -0.9
735,060 + MCAODC_03655 0.51 +1.6
735,207 + MCAODC_03655 0.74 +0.9
735,218 + MCAODC_03655 0.75 +1.5
735,218 + MCAODC_03655 0.75 -0.1
735,219 - MCAODC_03655 0.75 +0.5
735,219 - MCAODC_03655 0.75 -0.2
735,219 - MCAODC_03655 0.75 -0.1
735,219 - MCAODC_03655 0.75 +0.1
735,219 - MCAODC_03655 0.75 +0.3
735,237 + MCAODC_03655 0.78 +0.9
735,238 - MCAODC_03655 0.78 -1.0
735,238 - MCAODC_03655 0.78 +0.7
735,337 + +2.1
735,340 + -2.9
735,341 - -0.8
735,341 - +1.1
735,341 - +1.6
735,352 - -0.1
735,400 - +0.3
735,400 - +0.3
735,424 + -0.2
735,424 + +0.1
735,425 - +0.5
735,436 + -0.6
735,436 + -0.5
735,436 + +1.8
735,437 - +0.2
735,443 - -0.1
735,478 + +0.9
735,478 + +0.3
735,479 - +2.5
735,482 + -0.4
735,482 + +0.6
735,482 + +1.4
735,482 + +0.4
735,483 - -1.6
735,483 - +0.4
735,483 - +0.3
735,483 - +0.4
735,483 - -0.2
735,483 - -0.0
735,483 - +2.8
735,483 - -2.4
735,483 - +0.4
735,483 - +0.1
735,487 + +0.4
735,488 - +0.1
735,488 - -1.6
735,490 + +1.3
735,491 - +0.3
735,530 + yjbE MCAODC_03660 0.17 -2.1
735,530 + yjbE MCAODC_03660 0.17 -0.1
735,531 - yjbE MCAODC_03660 0.17 -1.6
735,531 - yjbE MCAODC_03660 0.17 +0.0
735,531 - yjbE MCAODC_03660 0.17 +0.2
735,661 - yjbE MCAODC_03660 0.71 +0.5
735,715 + -0.1
735,796 - +0.4
736,057 + -1.6
736,083 + +0.4
736,096 + +0.4
736,097 - +0.7
736,097 - +0.3
736,103 + -0.2
736,104 - +0.4
736,121 + -0.2
736,121 + +1.1
736,121 + +0.5
736,122 - -0.1
736,122 - +0.2
736,122 - -0.2
736,122 - -0.3
736,122 - +0.4
736,125 + +1.3
736,125 + -1.3
736,151 - +0.8
736,215 + +1.1
736,215 + -0.0
736,219 + -0.5
736,261 + -0.6

Or see this region's nucleotide sequence