Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt paeA and ytfK are separated by 78 nucleotides ytfK and ytfJ are separated by 324 nucleotides ytfJ and ytfI are separated by 62 nucleotides
MCAODC_02530: paeA - Polyamine export protein, at 517,387 to 518,730
paeA
MCAODC_02535: ytfK - Uncharacterized protein YtfK, at 518,809 to 519,015
ytfK
MCAODC_02540: ytfJ - Uncharacterized protein YtfJ, at 519,340 to 519,894
ytfJ
MCAODC_02545: ytfI - Uncharacterized protein YtfI, at 519,957 to 520,895
ytfI
Position (kb) 519
520 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 518.521 kb on + strand, within paeA at 518.521 kb on + strand, within paeA at 518.522 kb on - strand, within paeA at 518.522 kb on - strand, within paeA at 518.541 kb on + strand, within paeA at 518.541 kb on + strand, within paeA at 518.542 kb on - strand, within paeA at 518.542 kb on - strand, within paeA at 518.542 kb on - strand, within paeA at 518.550 kb on + strand, within paeA at 518.550 kb on + strand, within paeA at 518.550 kb on + strand, within paeA at 518.550 kb on + strand, within paeA at 518.551 kb on - strand, within paeA at 518.559 kb on + strand, within paeA at 518.560 kb on - strand, within paeA at 518.625 kb on + strand at 518.625 kb on + strand at 518.629 kb on + strand at 518.629 kb on + strand at 518.630 kb on - strand at 518.630 kb on - strand at 518.703 kb on + strand at 518.709 kb on + strand at 518.710 kb on - strand at 518.772 kb on - strand at 518.772 kb on - strand at 518.775 kb on - strand at 518.782 kb on - strand at 518.791 kb on + strand at 518.798 kb on + strand at 518.798 kb on + strand at 518.798 kb on + strand at 518.798 kb on + strand at 518.799 kb on - strand at 518.811 kb on - strand at 518.835 kb on + strand, within ytfK at 518.877 kb on + strand, within ytfK at 518.878 kb on - strand, within ytfK at 518.878 kb on - strand, within ytfK at 518.896 kb on - strand, within ytfK at 518.905 kb on - strand, within ytfK at 518.942 kb on + strand, within ytfK at 518.942 kb on + strand, within ytfK at 518.942 kb on + strand, within ytfK at 518.942 kb on + strand, within ytfK at 518.942 kb on + strand, within ytfK at 518.943 kb on - strand, within ytfK at 518.943 kb on - strand, within ytfK at 518.943 kb on - strand, within ytfK at 518.943 kb on - strand, within ytfK at 518.943 kb on - strand, within ytfK at 518.944 kb on + strand, within ytfK at 518.944 kb on + strand, within ytfK at 518.944 kb on + strand, within ytfK at 518.945 kb on - strand, within ytfK at 518.945 kb on - strand, within ytfK at 518.968 kb on + strand, within ytfK at 518.969 kb on - strand, within ytfK at 518.970 kb on + strand, within ytfK at 518.997 kb on - strand at 519.019 kb on + strand at 519.019 kb on + strand at 519.020 kb on - strand at 519.020 kb on - strand at 519.033 kb on + strand at 519.033 kb on + strand at 519.034 kb on - strand at 519.036 kb on + strand at 519.036 kb on + strand at 519.036 kb on + strand at 519.037 kb on - strand at 519.067 kb on + strand at 519.067 kb on + strand at 519.067 kb on + strand at 519.067 kb on + strand at 519.068 kb on - strand at 519.068 kb on - strand at 519.070 kb on + strand at 519.101 kb on - strand at 519.101 kb on - strand at 519.101 kb on - strand at 519.102 kb on + strand at 519.102 kb on + strand at 519.102 kb on + strand at 519.102 kb on + strand at 519.102 kb on + strand at 519.103 kb on - strand at 519.103 kb on - strand at 519.103 kb on - strand at 519.132 kb on - strand at 519.132 kb on - strand at 519.147 kb on + strand at 519.198 kb on + strand at 519.201 kb on - strand at 519.201 kb on - strand at 519.273 kb on + strand at 519.273 kb on + strand at 519.274 kb on - strand at 519.274 kb on - strand at 519.280 kb on + strand at 519.280 kb on + strand at 519.280 kb on + strand at 519.280 kb on + strand at 519.280 kb on + strand at 519.281 kb on - strand at 519.286 kb on + strand at 519.287 kb on - strand at 519.321 kb on - strand at 519.321 kb on - strand at 519.321 kb on - strand at 519.325 kb on + strand at 519.326 kb on - strand at 519.326 kb on - strand at 519.480 kb on + strand, within ytfJ at 519.481 kb on - strand, within ytfJ at 519.481 kb on - strand, within ytfJ at 519.485 kb on - strand, within ytfJ at 519.537 kb on + strand, within ytfJ at 519.538 kb on - strand, within ytfJ at 519.538 kb on - strand, within ytfJ at 519.538 kb on - strand, within ytfJ at 519.538 kb on - strand, within ytfJ at 519.538 kb on - strand, within ytfJ at 519.538 kb on - strand, within ytfJ at 519.538 kb on - strand, within ytfJ at 519.697 kb on - strand, within ytfJ at 519.699 kb on + strand, within ytfJ at 519.700 kb on - strand, within ytfJ at 519.709 kb on + strand, within ytfJ at 519.726 kb on + strand, within ytfJ at 519.958 kb on + strand at 519.984 kb on + strand at 519.988 kb on - strand at 519.999 kb on + strand at 520.065 kb on - strand, within ytfI at 520.065 kb on - strand, within ytfI at 520.070 kb on + strand, within ytfI at 520.071 kb on - strand, within ytfI at 520.161 kb on - strand, within ytfI at 520.296 kb on - strand, within ytfI at 520.296 kb on - strand, within ytfI at 520.359 kb on + strand, within ytfI at 520.372 kb on - strand, within ytfI at 520.391 kb on - strand, within ytfI at 520.483 kb on + strand, within ytfI at 520.542 kb on - strand, within ytfI at 520.542 kb on - strand, within ytfI at 520.574 kb on - strand, within ytfI at 520.662 kb on - strand, within ytfI
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 518,521 + paeA MCAODC_02530 0.84 -0.6 518,521 + paeA MCAODC_02530 0.84 -1.5 518,522 - paeA MCAODC_02530 0.84 -0.0 518,522 - paeA MCAODC_02530 0.84 -0.2 518,541 + paeA MCAODC_02530 0.86 +0.1 518,541 + paeA MCAODC_02530 0.86 -1.2 518,542 - paeA MCAODC_02530 0.86 -2.7 518,542 - paeA MCAODC_02530 0.86 -0.0 518,542 - paeA MCAODC_02530 0.86 -0.3 518,550 + paeA MCAODC_02530 0.87 -0.9 518,550 + paeA MCAODC_02530 0.87 -0.8 518,550 + paeA MCAODC_02530 0.87 +0.6 518,550 + paeA MCAODC_02530 0.87 +0.3 518,551 - paeA MCAODC_02530 0.87 +0.5 518,559 + paeA MCAODC_02530 0.87 -1.3 518,560 - paeA MCAODC_02530 0.87 +1.0 518,625 + -0.4 518,625 + +1.4 518,629 + +0.2 518,629 + +0.4 518,630 - +1.2 518,630 - -0.1 518,703 + -1.4 518,709 + +2.2 518,710 - -0.5 518,772 - +1.1 518,772 - +0.4 518,775 - -0.2 518,782 - -0.3 518,791 + -0.3 518,798 + +0.6 518,798 + +0.5 518,798 + +1.0 518,798 + -0.0 518,799 - +0.0 518,811 - -1.1 518,835 + ytfK MCAODC_02535 0.13 +0.7 518,877 + ytfK MCAODC_02535 0.33 -1.6 518,878 - ytfK MCAODC_02535 0.33 +0.3 518,878 - ytfK MCAODC_02535 0.33 -1.0 518,896 - ytfK MCAODC_02535 0.42 -0.4 518,905 - ytfK MCAODC_02535 0.46 +0.2 518,942 + ytfK MCAODC_02535 0.64 -0.1 518,942 + ytfK MCAODC_02535 0.64 +0.0 518,942 + ytfK MCAODC_02535 0.64 +0.2 518,942 + ytfK MCAODC_02535 0.64 -0.6 518,942 + ytfK MCAODC_02535 0.64 +0.1 518,943 - ytfK MCAODC_02535 0.65 -0.2 518,943 - ytfK MCAODC_02535 0.65 +0.4 518,943 - ytfK MCAODC_02535 0.65 -0.1 518,943 - ytfK MCAODC_02535 0.65 -0.0 518,943 - ytfK MCAODC_02535 0.65 +0.3 518,944 + ytfK MCAODC_02535 0.65 -0.4 518,944 + ytfK MCAODC_02535 0.65 -0.1 518,944 + ytfK MCAODC_02535 0.65 +0.3 518,945 - ytfK MCAODC_02535 0.66 +0.2 518,945 - ytfK MCAODC_02535 0.66 +0.4 518,968 + ytfK MCAODC_02535 0.77 +0.3 518,969 - ytfK MCAODC_02535 0.77 +0.6 518,970 + ytfK MCAODC_02535 0.78 -0.7 518,997 - -0.3 519,019 + +0.8 519,019 + +0.1 519,020 - -0.3 519,020 - +0.3 519,033 + -2.8 519,033 + +0.3 519,034 - +0.6 519,036 + +0.0 519,036 + -1.4 519,036 + +0.0 519,037 - +1.9 519,067 + -0.4 519,067 + +0.1 519,067 + -0.6 519,067 + -0.1 519,068 - -0.3 519,068 - +0.3 519,070 + +0.2 519,101 - +0.2 519,101 - +0.1 519,101 - -0.2 519,102 + +0.3 519,102 + -0.8 519,102 + -0.2 519,102 + +0.5 519,102 + +0.1 519,103 - -0.3 519,103 - +0.2 519,103 - +0.3 519,132 - -1.1 519,132 - -1.6 519,147 + -0.7 519,198 + +0.6 519,201 - -0.2 519,201 - +0.4 519,273 + +1.1 519,273 + +1.4 519,274 - -0.1 519,274 - -1.2 519,280 + -0.5 519,280 + -0.0 519,280 + +1.3 519,280 + +1.3 519,280 + -0.7 519,281 - +0.7 519,286 + +1.2 519,287 - +0.3 519,321 - -0.3 519,321 - +0.2 519,321 - +0.2 519,325 + -0.0 519,326 - +1.1 519,326 - +0.1 519,480 + ytfJ MCAODC_02540 0.25 -0.1 519,481 - ytfJ MCAODC_02540 0.25 +0.2 519,481 - ytfJ MCAODC_02540 0.25 -0.4 519,485 - ytfJ MCAODC_02540 0.26 -2.0 519,537 + ytfJ MCAODC_02540 0.35 -0.4 519,538 - ytfJ MCAODC_02540 0.36 +1.0 519,538 - ytfJ MCAODC_02540 0.36 +2.2 519,538 - ytfJ MCAODC_02540 0.36 -0.1 519,538 - ytfJ MCAODC_02540 0.36 +0.2 519,538 - ytfJ MCAODC_02540 0.36 +0.1 519,538 - ytfJ MCAODC_02540 0.36 +2.1 519,538 - ytfJ MCAODC_02540 0.36 -0.3 519,697 - ytfJ MCAODC_02540 0.64 +1.5 519,699 + ytfJ MCAODC_02540 0.65 +0.3 519,700 - ytfJ MCAODC_02540 0.65 +0.6 519,709 + ytfJ MCAODC_02540 0.66 +0.2 519,726 + ytfJ MCAODC_02540 0.70 +1.1 519,958 + -0.2 519,984 + +0.7 519,988 - +1.1 519,999 + +0.3 520,065 - ytfI MCAODC_02545 0.12 -0.6 520,065 - ytfI MCAODC_02545 0.12 +1.1 520,070 + ytfI MCAODC_02545 0.12 -0.3 520,071 - ytfI MCAODC_02545 0.12 -0.5 520,161 - ytfI MCAODC_02545 0.22 +0.7 520,296 - ytfI MCAODC_02545 0.36 -3.5 520,296 - ytfI MCAODC_02545 0.36 -0.6 520,359 + ytfI MCAODC_02545 0.43 +1.6 520,372 - ytfI MCAODC_02545 0.44 +1.2 520,391 - ytfI MCAODC_02545 0.46 -1.2 520,483 + ytfI MCAODC_02545 0.56 +0.6 520,542 - ytfI MCAODC_02545 0.62 +0.5 520,542 - ytfI MCAODC_02545 0.62 +0.4 520,574 - ytfI MCAODC_02545 0.66 -0.2 520,662 - ytfI MCAODC_02545 0.75 +0.3
Or see this region's nucleotide sequence