Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ytfQ and ppa are separated by 309 nucleotides ppa and chpB are separated by 79 nucleotides chpB and chpS are separated by 29 nucleotides chpS and ytfP are separated by 211 nucleotides
MCAODC_02485: ytfQ - galactofuranose ABC transporter substrate-binding protein YtfQ, at 507,684 to 508,640
ytfQ
MCAODC_02490: ppa - inorganic diphosphatase, at 508,950 to 509,480
ppa
MCAODC_02495: chpB - type II toxin-antitoxin system ChpB family toxin, at 509,560 to 509,874
chpB
MCAODC_02500: chpS - type II toxin-antitoxin system antitoxin ChpS, at 509,904 to 510,155
chpS
MCAODC_02505: ytfP - Gamma-glutamylcyclotransferase family protein YtfP, at 510,367 to 510,708
ytfP
Position (kb) 508
509
510 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 507.991 kb on + strand, within ytfQ at 507.991 kb on + strand, within ytfQ at 507.992 kb on - strand, within ytfQ at 508.058 kb on + strand, within ytfQ at 508.100 kb on + strand, within ytfQ at 508.115 kb on + strand, within ytfQ at 508.115 kb on + strand, within ytfQ at 508.116 kb on - strand, within ytfQ at 508.116 kb on - strand, within ytfQ at 508.116 kb on - strand, within ytfQ at 508.139 kb on + strand, within ytfQ at 508.238 kb on + strand, within ytfQ at 508.238 kb on + strand, within ytfQ at 508.238 kb on + strand, within ytfQ at 508.239 kb on - strand, within ytfQ at 508.239 kb on - strand, within ytfQ at 508.274 kb on + strand, within ytfQ at 508.274 kb on + strand, within ytfQ at 508.275 kb on - strand, within ytfQ at 508.275 kb on - strand, within ytfQ at 508.275 kb on - strand, within ytfQ at 508.275 kb on - strand, within ytfQ at 508.275 kb on - strand, within ytfQ at 508.276 kb on + strand, within ytfQ at 508.277 kb on - strand, within ytfQ at 508.277 kb on - strand, within ytfQ at 508.277 kb on - strand, within ytfQ at 508.350 kb on + strand, within ytfQ at 508.351 kb on - strand, within ytfQ at 508.351 kb on - strand, within ytfQ at 508.426 kb on - strand, within ytfQ at 508.426 kb on - strand, within ytfQ at 508.621 kb on - strand at 508.626 kb on + strand at 508.626 kb on + strand at 508.641 kb on - strand at 508.660 kb on + strand at 508.660 kb on + strand at 508.664 kb on + strand at 508.665 kb on - strand at 508.665 kb on - strand at 508.665 kb on - strand at 508.665 kb on - strand at 508.696 kb on + strand at 508.697 kb on - strand at 508.698 kb on + strand at 508.698 kb on + strand at 508.715 kb on - strand at 508.791 kb on + strand at 508.905 kb on + strand at 508.905 kb on + strand at 508.905 kb on + strand at 509.474 kb on + strand at 509.478 kb on + strand at 509.478 kb on + strand at 509.478 kb on + strand at 509.479 kb on - strand at 509.493 kb on + strand at 509.496 kb on + strand at 509.496 kb on + strand at 509.521 kb on - strand at 509.550 kb on + strand at 509.551 kb on - strand at 509.584 kb on + strand at 509.585 kb on - strand at 509.647 kb on + strand, within chpB at 509.647 kb on + strand, within chpB at 509.710 kb on + strand, within chpB at 509.710 kb on + strand, within chpB at 509.711 kb on - strand, within chpB at 509.711 kb on - strand, within chpB at 509.721 kb on + strand, within chpB at 509.732 kb on + strand, within chpB at 509.911 kb on - strand at 509.911 kb on - strand at 509.911 kb on - strand at 509.911 kb on - strand at 510.078 kb on + strand, within chpS at 510.083 kb on + strand, within chpS at 510.083 kb on + strand, within chpS at 510.083 kb on + strand, within chpS at 510.084 kb on - strand, within chpS at 510.116 kb on + strand, within chpS at 510.116 kb on + strand, within chpS at 510.116 kb on + strand, within chpS at 510.117 kb on - strand, within chpS at 510.117 kb on - strand, within chpS at 510.117 kb on - strand, within chpS at 510.117 kb on - strand, within chpS at 510.117 kb on - strand, within chpS at 510.146 kb on + strand at 510.147 kb on - strand at 510.149 kb on + strand at 510.150 kb on - strand at 510.150 kb on - strand at 510.150 kb on - strand at 510.150 kb on - strand at 510.150 kb on - strand at 510.197 kb on - strand at 510.253 kb on + strand at 510.254 kb on - strand at 510.256 kb on + strand at 510.256 kb on + strand at 510.256 kb on + strand at 510.256 kb on + strand at 510.257 kb on - strand at 510.257 kb on - strand at 510.257 kb on - strand at 510.257 kb on - strand at 510.257 kb on - strand at 510.302 kb on + strand at 510.356 kb on + strand at 510.362 kb on + strand at 510.363 kb on - strand at 510.363 kb on - strand at 510.363 kb on - strand at 510.368 kb on + strand at 510.368 kb on + strand at 510.368 kb on + strand at 510.369 kb on - strand at 510.369 kb on - strand at 510.369 kb on - strand at 510.372 kb on + strand at 510.372 kb on + strand at 510.373 kb on - strand at 510.373 kb on - strand at 510.373 kb on - strand at 510.403 kb on + strand, within ytfP at 510.404 kb on - strand, within ytfP at 510.409 kb on + strand, within ytfP at 510.410 kb on - strand, within ytfP at 510.432 kb on - strand, within ytfP at 510.437 kb on + strand, within ytfP at 510.437 kb on + strand, within ytfP at 510.438 kb on - strand, within ytfP
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 507,991 + ytfQ MCAODC_02485 0.32 -0.1 507,991 + ytfQ MCAODC_02485 0.32 -0.3 507,992 - ytfQ MCAODC_02485 0.32 -0.6 508,058 + ytfQ MCAODC_02485 0.39 -1.6 508,100 + ytfQ MCAODC_02485 0.43 +0.7 508,115 + ytfQ MCAODC_02485 0.45 +1.4 508,115 + ytfQ MCAODC_02485 0.45 -1.3 508,116 - ytfQ MCAODC_02485 0.45 -0.5 508,116 - ytfQ MCAODC_02485 0.45 +1.2 508,116 - ytfQ MCAODC_02485 0.45 -0.5 508,139 + ytfQ MCAODC_02485 0.48 -0.5 508,238 + ytfQ MCAODC_02485 0.58 +2.3 508,238 + ytfQ MCAODC_02485 0.58 -1.1 508,238 + ytfQ MCAODC_02485 0.58 -1.8 508,239 - ytfQ MCAODC_02485 0.58 +0.0 508,239 - ytfQ MCAODC_02485 0.58 +0.2 508,274 + ytfQ MCAODC_02485 0.62 +1.2 508,274 + ytfQ MCAODC_02485 0.62 -2.7 508,275 - ytfQ MCAODC_02485 0.62 +0.1 508,275 - ytfQ MCAODC_02485 0.62 +0.5 508,275 - ytfQ MCAODC_02485 0.62 -2.9 508,275 - ytfQ MCAODC_02485 0.62 +1.1 508,275 - ytfQ MCAODC_02485 0.62 +0.2 508,276 + ytfQ MCAODC_02485 0.62 +0.0 508,277 - ytfQ MCAODC_02485 0.62 -0.1 508,277 - ytfQ MCAODC_02485 0.62 +0.4 508,277 - ytfQ MCAODC_02485 0.62 -0.5 508,350 + ytfQ MCAODC_02485 0.70 +0.9 508,351 - ytfQ MCAODC_02485 0.70 +0.0 508,351 - ytfQ MCAODC_02485 0.70 -0.5 508,426 - ytfQ MCAODC_02485 0.78 -0.6 508,426 - ytfQ MCAODC_02485 0.78 +0.4 508,621 - -0.5 508,626 + +0.3 508,626 + -0.4 508,641 - +0.6 508,660 + -1.8 508,660 + +0.8 508,664 + -1.1 508,665 - +0.1 508,665 - -0.3 508,665 - -0.9 508,665 - +0.6 508,696 + +0.5 508,697 - -2.8 508,698 + +0.8 508,698 + +0.4 508,715 - -0.5 508,791 + -0.1 508,905 + +0.3 508,905 + +0.5 508,905 + +0.3 509,474 + -0.7 509,478 + -0.0 509,478 + +0.8 509,478 + +0.5 509,479 - +1.9 509,493 + -1.8 509,496 + +1.7 509,496 + -0.0 509,521 - +0.5 509,550 + +0.4 509,551 - +0.8 509,584 + +0.3 509,585 - -0.3 509,647 + chpB MCAODC_02495 0.28 +0.6 509,647 + chpB MCAODC_02495 0.28 -0.6 509,710 + chpB MCAODC_02495 0.48 -0.8 509,710 + chpB MCAODC_02495 0.48 -0.4 509,711 - chpB MCAODC_02495 0.48 -0.1 509,711 - chpB MCAODC_02495 0.48 -0.1 509,721 + chpB MCAODC_02495 0.51 -0.0 509,732 + chpB MCAODC_02495 0.55 +1.5 509,911 - -0.3 509,911 - +1.1 509,911 - +0.6 509,911 - -0.6 510,078 + chpS MCAODC_02500 0.69 -0.4 510,083 + chpS MCAODC_02500 0.71 +0.1 510,083 + chpS MCAODC_02500 0.71 +3.3 510,083 + chpS MCAODC_02500 0.71 +0.4 510,084 - chpS MCAODC_02500 0.71 -1.0 510,116 + chpS MCAODC_02500 0.84 +0.3 510,116 + chpS MCAODC_02500 0.84 +0.0 510,116 + chpS MCAODC_02500 0.84 -1.7 510,117 - chpS MCAODC_02500 0.85 +0.1 510,117 - chpS MCAODC_02500 0.85 -0.2 510,117 - chpS MCAODC_02500 0.85 -0.5 510,117 - chpS MCAODC_02500 0.85 +0.1 510,117 - chpS MCAODC_02500 0.85 -0.2 510,146 + -0.2 510,147 - +1.5 510,149 + +0.1 510,150 - -1.1 510,150 - +0.5 510,150 - -1.4 510,150 - -0.9 510,150 - +0.8 510,197 - -0.2 510,253 + +0.6 510,254 - +0.6 510,256 + +0.1 510,256 + -0.3 510,256 + +0.4 510,256 + -0.1 510,257 - +0.2 510,257 - -0.1 510,257 - +0.2 510,257 - -0.3 510,257 - -1.2 510,302 + +1.8 510,356 + -0.2 510,362 + -0.3 510,363 - +0.5 510,363 - +1.3 510,363 - -0.3 510,368 + +0.2 510,368 + -0.6 510,368 + +0.1 510,369 - -0.0 510,369 - +0.0 510,369 - +1.1 510,372 + -2.3 510,372 + -2.1 510,373 - -0.3 510,373 - -0.0 510,373 - -1.8 510,403 + ytfP MCAODC_02505 0.11 -2.2 510,404 - ytfP MCAODC_02505 0.11 -1.2 510,409 + ytfP MCAODC_02505 0.12 -0.0 510,410 - ytfP MCAODC_02505 0.13 -0.4 510,432 - ytfP MCAODC_02505 0.19 -0.3 510,437 + ytfP MCAODC_02505 0.20 +0.9 510,437 + ytfP MCAODC_02505 0.20 -0.3 510,438 - ytfP MCAODC_02505 0.21 -2.0
Or see this region's nucleotide sequence