Strain Fitness in Escherichia coli ECRC101 around MCAODC_00910
Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Control_ECRC101_WM |
---|---|---|---|---|---|
remove | |||||
160,791 | + | fimA | MCAODC_00900 | 0.40 | +0.2 |
160,791 | + | fimA | MCAODC_00900 | 0.40 | -0.1 |
160,829 | + | fimA | MCAODC_00900 | 0.47 | +1.2 |
160,829 | + | fimA | MCAODC_00900 | 0.47 | -0.4 |
160,830 | - | fimA | MCAODC_00900 | 0.47 | +0.5 |
160,842 | + | fimA | MCAODC_00900 | 0.49 | -0.1 |
160,843 | - | fimA | MCAODC_00900 | 0.49 | -0.7 |
160,843 | - | fimA | MCAODC_00900 | 0.49 | -1.4 |
160,843 | - | fimA | MCAODC_00900 | 0.49 | -0.7 |
160,843 | - | fimA | MCAODC_00900 | 0.49 | +0.8 |
160,843 | - | fimA | MCAODC_00900 | 0.49 | -0.4 |
160,843 | - | fimA | MCAODC_00900 | 0.49 | -0.2 |
160,843 | - | fimA | MCAODC_00900 | 0.49 | -0.3 |
160,848 | + | fimA | MCAODC_00900 | 0.50 | +0.1 |
160,848 | + | fimA | MCAODC_00900 | 0.50 | -2.1 |
160,848 | + | fimA | MCAODC_00900 | 0.50 | +0.8 |
160,848 | + | fimA | MCAODC_00900 | 0.50 | +0.8 |
160,848 | + | fimA | MCAODC_00900 | 0.50 | -0.7 |
160,848 | + | fimA | MCAODC_00900 | 0.50 | +0.1 |
160,848 | + | fimA | MCAODC_00900 | 0.50 | +0.9 |
160,849 | - | fimA | MCAODC_00900 | 0.50 | -1.7 |
160,849 | - | fimA | MCAODC_00900 | 0.50 | +0.1 |
160,849 | - | fimA | MCAODC_00900 | 0.50 | +0.2 |
160,849 | - | fimA | MCAODC_00900 | 0.50 | +0.4 |
160,849 | - | fimA | MCAODC_00900 | 0.50 | -0.2 |
160,849 | - | fimA | MCAODC_00900 | 0.50 | -0.4 |
160,849 | - | fimA | MCAODC_00900 | 0.50 | -0.9 |
160,850 | + | fimA | MCAODC_00900 | 0.50 | -0.1 |
160,851 | - | fimA | MCAODC_00900 | 0.50 | -0.2 |
160,851 | - | fimA | MCAODC_00900 | 0.50 | +0.4 |
160,909 | - | fimA | MCAODC_00900 | 0.60 | -0.2 |
160,937 | + | fimA | MCAODC_00900 | 0.65 | +1.2 |
160,938 | - | fimA | MCAODC_00900 | 0.65 | -0.7 |
160,938 | - | fimA | MCAODC_00900 | 0.65 | +0.9 |
160,944 | + | fimA | MCAODC_00900 | 0.66 | -0.1 |
160,944 | + | fimA | MCAODC_00900 | 0.66 | -0.5 |
160,945 | - | fimA | MCAODC_00900 | 0.66 | +0.1 |
160,950 | + | fimA | MCAODC_00900 | 0.67 | +0.3 |
160,951 | - | fimA | MCAODC_00900 | 0.67 | -0.0 |
160,951 | - | fimA | MCAODC_00900 | 0.67 | +0.8 |
160,997 | + | fimA | MCAODC_00900 | 0.74 | +0.5 |
161,041 | + | fimA | MCAODC_00900 | 0.82 | -2.2 |
161,042 | - | fimA | MCAODC_00900 | 0.82 | +1.6 |
161,042 | - | fimA | MCAODC_00900 | 0.82 | -0.2 |
161,055 | - | fimA | MCAODC_00900 | 0.84 | -0.8 |
161,083 | - | fimA | MCAODC_00900 | 0.89 | -0.3 |
161,083 | - | fimA | MCAODC_00900 | 0.89 | +0.5 |
161,083 | - | fimA | MCAODC_00900 | 0.89 | -0.1 |
161,083 | - | fimA | MCAODC_00900 | 0.89 | -0.4 |
161,099 | + | -0.2 | |||
161,100 | - | -0.0 | |||
161,143 | + | +0.6 | |||
161,143 | + | -0.6 | |||
161,144 | - | +0.5 | |||
161,149 | + | -0.0 | |||
161,149 | + | -1.1 | |||
161,150 | - | -0.3 | |||
161,150 | - | -1.3 | |||
161,153 | - | -0.3 | |||
161,168 | + | -0.0 | |||
161,169 | - | +0.4 | |||
161,169 | - | -0.9 | |||
161,169 | - | +0.1 | |||
161,169 | - | +0.8 | |||
161,176 | + | +0.7 | |||
161,176 | + | -0.6 | |||
161,177 | - | +0.3 | |||
161,177 | - | -2.6 | |||
161,190 | - | -0.5 | |||
161,190 | - | +1.6 | |||
161,197 | + | +0.4 | |||
161,241 | + | fimA | MCAODC_00905 | 0.12 | -0.8 |
161,306 | + | fimA | MCAODC_00905 | 0.23 | +0.2 |
161,306 | + | fimA | MCAODC_00905 | 0.23 | +0.1 |
161,347 | - | fimA | MCAODC_00905 | 0.30 | -0.5 |
161,347 | - | fimA | MCAODC_00905 | 0.30 | -0.2 |
161,362 | + | fimA | MCAODC_00905 | 0.32 | +0.9 |
161,362 | + | fimA | MCAODC_00905 | 0.32 | +0.2 |
161,363 | - | fimA | MCAODC_00905 | 0.32 | +0.2 |
161,379 | + | fimA | MCAODC_00905 | 0.35 | +0.1 |
161,518 | - | fimA | MCAODC_00905 | 0.59 | +0.4 |
161,518 | - | fimA | MCAODC_00905 | 0.59 | +0.4 |
161,591 | + | fimA | MCAODC_00905 | 0.71 | +1.1 |
161,673 | + | fimA | MCAODC_00905 | 0.85 | +0.4 |
161,674 | - | fimA | MCAODC_00905 | 0.85 | +0.2 |
161,674 | - | fimA | MCAODC_00905 | 0.85 | +0.3 |
161,749 | + | -0.0 | |||
161,749 | + | +0.3 | |||
161,750 | - | +0.9 | |||
161,750 | - | -0.6 | |||
161,750 | - | +1.0 | |||
161,750 | - | -0.3 | |||
161,750 | - | -1.6 | |||
161,769 | + | -1.3 | |||
161,770 | - | -0.9 | |||
161,773 | + | +0.3 | |||
161,774 | - | -0.9 | |||
161,820 | + | -0.5 | |||
161,846 | + | +0.2 | |||
161,867 | + | -1.5 | |||
161,871 | + | -0.5 | |||
161,872 | - | -2.1 | |||
161,908 | - | fimA | MCAODC_00910 | 0.12 | +0.6 |
161,908 | - | fimA | MCAODC_00910 | 0.12 | -1.4 |
161,908 | - | fimA | MCAODC_00910 | 0.12 | -0.1 |
161,914 | + | fimA | MCAODC_00910 | 0.13 | +0.1 |
161,914 | + | fimA | MCAODC_00910 | 0.13 | -1.2 |
161,923 | + | fimA | MCAODC_00910 | 0.13 | +0.2 |
161,961 | + | fimA | MCAODC_00910 | 0.17 | -0.4 |
161,962 | - | fimA | MCAODC_00910 | 0.17 | -0.8 |
161,971 | + | fimA | MCAODC_00910 | 0.18 | -1.3 |
161,982 | + | fimA | MCAODC_00910 | 0.19 | +1.6 |
161,983 | - | fimA | MCAODC_00910 | 0.19 | -0.5 |
161,983 | - | fimA | MCAODC_00910 | 0.19 | +0.1 |
161,994 | + | fimA | MCAODC_00910 | 0.20 | -0.4 |
161,994 | + | fimA | MCAODC_00910 | 0.20 | -0.1 |
162,009 | + | fimA | MCAODC_00910 | 0.21 | -0.2 |
162,016 | + | fimA | MCAODC_00910 | 0.22 | +1.3 |
162,031 | + | fimA | MCAODC_00910 | 0.23 | +1.1 |
162,055 | + | fimA | MCAODC_00910 | 0.25 | +0.6 |
162,072 | + | fimA | MCAODC_00910 | 0.27 | +0.5 |
162,075 | + | fimA | MCAODC_00910 | 0.27 | -0.1 |
162,083 | + | fimA | MCAODC_00910 | 0.28 | +0.4 |
162,083 | + | fimA | MCAODC_00910 | 0.28 | +1.2 |
162,083 | + | fimA | MCAODC_00910 | 0.28 | -1.0 |
162,084 | - | fimA | MCAODC_00910 | 0.28 | +0.2 |
162,084 | - | fimA | MCAODC_00910 | 0.28 | -0.5 |
162,109 | - | fimA | MCAODC_00910 | 0.30 | +1.2 |
162,137 | + | fimA | MCAODC_00910 | 0.33 | +1.2 |
162,138 | - | fimA | MCAODC_00910 | 0.33 | -0.1 |
162,138 | - | fimA | MCAODC_00910 | 0.33 | -0.2 |
162,138 | - | fimA | MCAODC_00910 | 0.33 | +0.9 |
162,151 | - | fimA | MCAODC_00910 | 0.34 | -0.9 |
162,151 | - | fimA | MCAODC_00910 | 0.34 | +1.8 |
162,151 | - | fimA | MCAODC_00910 | 0.34 | +0.7 |
162,153 | + | fimA | MCAODC_00910 | 0.34 | +0.3 |
162,160 | + | fimA | MCAODC_00910 | 0.35 | -0.9 |
162,189 | + | fimA | MCAODC_00910 | 0.37 | -0.1 |
162,190 | - | fimA | MCAODC_00910 | 0.37 | -0.2 |
162,190 | - | fimA | MCAODC_00910 | 0.37 | -0.5 |
162,190 | - | fimA | MCAODC_00910 | 0.37 | +1.7 |
162,196 | - | fimA | MCAODC_00910 | 0.38 | +0.7 |
162,225 | + | fimA | MCAODC_00910 | 0.41 | -0.6 |
162,251 | + | fimA | MCAODC_00910 | 0.43 | -0.6 |
162,252 | - | fimA | MCAODC_00910 | 0.43 | -0.3 |
162,252 | - | fimA | MCAODC_00910 | 0.43 | -0.7 |
162,252 | - | fimA | MCAODC_00910 | 0.43 | -1.1 |
162,252 | - | fimA | MCAODC_00910 | 0.43 | +1.7 |
162,257 | + | fimA | MCAODC_00910 | 0.44 | -1.2 |
162,257 | + | fimA | MCAODC_00910 | 0.44 | +0.8 |
162,257 | + | fimA | MCAODC_00910 | 0.44 | -0.5 |
162,258 | - | fimA | MCAODC_00910 | 0.44 | -0.7 |
162,280 | - | fimA | MCAODC_00910 | 0.46 | -0.2 |
162,297 | + | fimA | MCAODC_00910 | 0.47 | +1.1 |
162,297 | + | fimA | MCAODC_00910 | 0.47 | -1.5 |
162,310 | + | fimA | MCAODC_00910 | 0.48 | -0.2 |
162,368 | + | fimA | MCAODC_00910 | 0.54 | +0.8 |
162,368 | + | fimA | MCAODC_00910 | 0.54 | -0.9 |
162,368 | + | fimA | MCAODC_00910 | 0.54 | +1.1 |
162,368 | + | fimA | MCAODC_00910 | 0.54 | -0.3 |
162,368 | + | fimA | MCAODC_00910 | 0.54 | +0.3 |
162,369 | - | fimA | MCAODC_00910 | 0.54 | +0.5 |
162,369 | - | fimA | MCAODC_00910 | 0.54 | +0.5 |
162,369 | - | fimA | MCAODC_00910 | 0.54 | -0.3 |
162,369 | - | fimA | MCAODC_00910 | 0.54 | -0.2 |
162,370 | + | fimA | MCAODC_00910 | 0.54 | +1.0 |
162,370 | + | fimA | MCAODC_00910 | 0.54 | -0.5 |
162,370 | + | fimA | MCAODC_00910 | 0.54 | +1.2 |
162,370 | + | fimA | MCAODC_00910 | 0.54 | +2.2 |
162,370 | + | fimA | MCAODC_00910 | 0.54 | +1.3 |
162,370 | + | fimA | MCAODC_00910 | 0.54 | -1.2 |
162,371 | - | fimA | MCAODC_00910 | 0.54 | +0.5 |
162,371 | - | fimA | MCAODC_00910 | 0.54 | -0.1 |
162,371 | - | fimA | MCAODC_00910 | 0.54 | -0.1 |
162,372 | + | fimA | MCAODC_00910 | 0.54 | +0.6 |
162,372 | + | fimA | MCAODC_00910 | 0.54 | -1.7 |
162,372 | + | fimA | MCAODC_00910 | 0.54 | -0.0 |
162,372 | + | fimA | MCAODC_00910 | 0.54 | -0.2 |
162,372 | + | fimA | MCAODC_00910 | 0.54 | +0.0 |
162,372 | + | fimA | MCAODC_00910 | 0.54 | +2.1 |
162,372 | + | fimA | MCAODC_00910 | 0.54 | -2.6 |
162,372 | + | fimA | MCAODC_00910 | 0.54 | -0.1 |
162,372 | + | fimA | MCAODC_00910 | 0.54 | +0.5 |
162,372 | + | fimA | MCAODC_00910 | 0.54 | +2.1 |
162,372 | + | fimA | MCAODC_00910 | 0.54 | +0.1 |
162,372 | + | fimA | MCAODC_00910 | 0.54 | -3.1 |
162,372 | + | fimA | MCAODC_00910 | 0.54 | -0.1 |
162,373 | - | fimA | MCAODC_00910 | 0.54 | +0.3 |
162,373 | - | fimA | MCAODC_00910 | 0.54 | -0.6 |
162,373 | - | fimA | MCAODC_00910 | 0.54 | -0.2 |
162,373 | - | fimA | MCAODC_00910 | 0.54 | +0.1 |
162,373 | - | fimA | MCAODC_00910 | 0.54 | +0.1 |
162,373 | - | fimA | MCAODC_00910 | 0.54 | +0.7 |
162,373 | - | fimA | MCAODC_00910 | 0.54 | +0.2 |
162,373 | - | fimA | MCAODC_00910 | 0.54 | +0.9 |
162,373 | - | fimA | MCAODC_00910 | 0.54 | +0.4 |
162,373 | - | fimA | MCAODC_00910 | 0.54 | +0.8 |
162,373 | - | fimA | MCAODC_00910 | 0.54 | +0.2 |
162,373 | - | fimA | MCAODC_00910 | 0.54 | -0.1 |
162,373 | - | fimA | MCAODC_00910 | 0.54 | -1.0 |
162,373 | - | fimA | MCAODC_00910 | 0.54 | +0.8 |
162,376 | + | fimA | MCAODC_00910 | 0.54 | -0.4 |
162,376 | + | fimA | MCAODC_00910 | 0.54 | -0.5 |
162,377 | - | fimA | MCAODC_00910 | 0.54 | +0.1 |
162,377 | - | fimA | MCAODC_00910 | 0.54 | -1.2 |
162,405 | - | fimA | MCAODC_00910 | 0.57 | +0.2 |
162,405 | - | fimA | MCAODC_00910 | 0.57 | +0.2 |
162,405 | - | fimA | MCAODC_00910 | 0.57 | -0.2 |
162,518 | + | fimA | MCAODC_00910 | 0.67 | -0.1 |
162,518 | + | fimA | MCAODC_00910 | 0.67 | -0.5 |
162,518 | + | fimA | MCAODC_00910 | 0.67 | -0.4 |
162,518 | + | fimA | MCAODC_00910 | 0.67 | +0.2 |
162,519 | - | fimA | MCAODC_00910 | 0.67 | -0.4 |
162,519 | - | fimA | MCAODC_00910 | 0.67 | -0.1 |
162,519 | - | fimA | MCAODC_00910 | 0.67 | -2.0 |
162,519 | - | fimA | MCAODC_00910 | 0.67 | +0.1 |
162,519 | - | fimA | MCAODC_00910 | 0.67 | +0.8 |
162,565 | + | fimA | MCAODC_00910 | 0.71 | +1.0 |
162,578 | + | fimA | MCAODC_00910 | 0.72 | -2.4 |
162,584 | + | fimA | MCAODC_00910 | 0.73 | +0.9 |
162,585 | - | fimA | MCAODC_00910 | 0.73 | -0.9 |
162,585 | - | fimA | MCAODC_00910 | 0.73 | -0.5 |
162,592 | + | fimA | MCAODC_00910 | 0.74 | +0.2 |
162,604 | + | fimA | MCAODC_00910 | 0.75 | -0.4 |
162,649 | + | fimA | MCAODC_00910 | 0.79 | -0.0 |
162,682 | - | fimA | MCAODC_00910 | 0.82 | -2.8 |
162,698 | + | fimA | MCAODC_00910 | 0.83 | +0.6 |
162,699 | - | fimA | MCAODC_00910 | 0.83 | -0.1 |
162,706 | + | fimA | MCAODC_00910 | 0.84 | -0.5 |
162,714 | + | fimA | MCAODC_00910 | 0.85 | -0.1 |
162,715 | - | fimA | MCAODC_00910 | 0.85 | -1.1 |
162,720 | + | fimA | MCAODC_00910 | 0.85 | +0.3 |
162,721 | - | fimA | MCAODC_00910 | 0.85 | +2.2 |
162,733 | + | fimA | MCAODC_00910 | 0.86 | -0.6 |
162,734 | - | fimA | MCAODC_00910 | 0.86 | +0.3 |
162,749 | + | fimA | MCAODC_00910 | 0.88 | +0.3 |
162,750 | - | fimA | MCAODC_00910 | 0.88 | +0.0 |
162,786 | + | +0.4 | |||
162,794 | - | +0.5 | |||
162,823 | + | -0.1 | |||
162,871 | + | +0.4 | |||
162,875 | + | +0.3 | |||
162,881 | + | -2.1 | |||
162,881 | + | -0.4 | |||
162,882 | - | -1.4 | |||
162,885 | + | -0.1 | |||
162,885 | + | +0.2 | |||
162,947 | + | +0.6 | |||
162,947 | + | -0.4 | |||
162,947 | + | +0.1 | |||
162,947 | + | -1.2 | |||
162,948 | - | -0.5 | |||
162,950 | + | +0.6 | |||
162,951 | - | +0.1 | |||
162,978 | + | -0.4 | |||
162,978 | + | -0.1 | |||
162,978 | + | +1.3 | |||
162,979 | - | +0.3 | |||
162,979 | - | +0.4 | |||
163,013 | - | +0.9 | |||
163,054 | - | -0.0 | |||
163,054 | - | -0.2 | |||
163,097 | - | -0.4 | |||
163,097 | - | -0.7 | |||
163,185 | + | panB | MCAODC_00915 | 0.21 | +0.4 |
163,185 | + | panB | MCAODC_00915 | 0.21 | -0.5 |
163,185 | + | panB | MCAODC_00915 | 0.21 | +0.5 |
163,186 | - | panB | MCAODC_00915 | 0.21 | +1.8 |
163,186 | - | panB | MCAODC_00915 | 0.21 | +0.2 |
163,224 | + | panB | MCAODC_00915 | 0.26 | +0.2 |
163,285 | + | panB | MCAODC_00915 | 0.34 | +1.1 |
163,285 | + | panB | MCAODC_00915 | 0.34 | +0.1 |
163,285 | + | panB | MCAODC_00915 | 0.34 | -0.2 |
163,341 | + | panB | MCAODC_00915 | 0.41 | +0.4 |
163,415 | + | panB | MCAODC_00915 | 0.50 | -2.3 |
163,427 | + | panB | MCAODC_00915 | 0.51 | +0.3 |
163,427 | + | panB | MCAODC_00915 | 0.51 | -1.2 |
163,433 | + | panB | MCAODC_00915 | 0.52 | -0.6 |
163,466 | - | panB | MCAODC_00915 | 0.56 | +0.2 |
163,521 | - | panB | MCAODC_00915 | 0.63 | -0.4 |
163,526 | + | panB | MCAODC_00915 | 0.64 | +0.2 |
163,526 | + | panB | MCAODC_00915 | 0.64 | +0.3 |
163,527 | - | panB | MCAODC_00915 | 0.64 | +0.3 |
163,587 | + | panB | MCAODC_00915 | 0.72 | +0.3 |
163,587 | + | panB | MCAODC_00915 | 0.72 | -0.1 |
163,587 | + | panB | MCAODC_00915 | 0.72 | -0.9 |
163,591 | - | panB | MCAODC_00915 | 0.72 | +4.5 |
163,756 | + | -0.5 | |||
163,756 | + | +0.4 | |||
163,756 | + | +0.4 | |||
163,756 | + | -0.4 | |||
163,756 | + | +0.2 | |||
163,757 | - | -0.1 | |||
163,757 | - | +0.9 | |||
163,757 | - | -0.2 | |||
163,757 | - | +2.4 | |||
163,757 | - | +0.4 | |||
163,757 | - | -0.3 | |||
163,757 | - | +0.0 | |||
163,757 | - | -0.4 | |||
163,757 | - | -0.9 | |||
163,758 | + | -0.6 | |||
163,758 | + | -0.2 | |||
163,758 | + | +0.7 | |||
163,758 | + | +0.3 | |||
163,758 | + | -1.2 | |||
163,758 | + | -0.3 | |||
163,758 | + | +0.3 | |||
163,758 | + | +0.2 | |||
163,759 | - | +0.5 | |||
163,759 | - | -0.5 | |||
163,759 | - | -0.2 | |||
163,829 | - | +0.7 |
Or see this region's nucleotide sequence