Experiment: beta-Cyclodextrin 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS20390 and ABI39_RS20395 are separated by 7 nucleotides ABI39_RS20395 and ABI39_RS20400 are separated by 68 nucleotides ABI39_RS20400 and ABI39_RS20405 are separated by 195 nucleotides
ABI39_RS20390: ABI39_RS20390 - hypothetical protein, at 5,031,007 to 5,032,524
_RS20390
ABI39_RS20395: ABI39_RS20395 - DedA family protein, at 5,032,532 to 5,033,158
_RS20395
ABI39_RS20400: ABI39_RS20400 - thiol peroxidase, at 5,033,227 to 5,033,730
_RS20400
ABI39_RS20405: ABI39_RS20405 - GDP-L-fucose synthase, at 5,033,926 to 5,034,996
_RS20405
Position (kb) 5032
5033
5034 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5031.559 kb on + strand, within ABI39_RS20390 at 5031.560 kb on - strand, within ABI39_RS20390 at 5031.780 kb on + strand, within ABI39_RS20390 at 5031.800 kb on - strand, within ABI39_RS20390 at 5031.800 kb on - strand, within ABI39_RS20390 at 5031.800 kb on - strand, within ABI39_RS20390 at 5031.935 kb on + strand, within ABI39_RS20390 at 5031.959 kb on + strand, within ABI39_RS20390 at 5031.959 kb on + strand, within ABI39_RS20390 at 5031.959 kb on + strand, within ABI39_RS20390 at 5031.961 kb on + strand, within ABI39_RS20390 at 5031.962 kb on - strand, within ABI39_RS20390 at 5031.962 kb on - strand, within ABI39_RS20390 at 5031.964 kb on - strand, within ABI39_RS20390 at 5031.986 kb on + strand, within ABI39_RS20390 at 5032.013 kb on - strand, within ABI39_RS20390 at 5032.014 kb on + strand, within ABI39_RS20390 at 5032.014 kb on + strand, within ABI39_RS20390 at 5032.015 kb on - strand, within ABI39_RS20390 at 5032.015 kb on - strand, within ABI39_RS20390 at 5032.015 kb on - strand, within ABI39_RS20390 at 5032.065 kb on + strand, within ABI39_RS20390 at 5032.070 kb on - strand, within ABI39_RS20390 at 5032.228 kb on + strand, within ABI39_RS20390 at 5032.365 kb on - strand, within ABI39_RS20390 at 5032.405 kb on + strand at 5032.472 kb on + strand at 5032.532 kb on - strand at 5032.706 kb on - strand, within ABI39_RS20395 at 5032.706 kb on - strand, within ABI39_RS20395 at 5032.707 kb on + strand, within ABI39_RS20395 at 5032.708 kb on - strand, within ABI39_RS20395 at 5032.751 kb on + strand, within ABI39_RS20395 at 5032.760 kb on + strand, within ABI39_RS20395 at 5032.856 kb on + strand, within ABI39_RS20395 at 5032.973 kb on + strand, within ABI39_RS20395 at 5033.244 kb on + strand at 5033.410 kb on - strand, within ABI39_RS20400 at 5033.532 kb on + strand, within ABI39_RS20400 at 5033.557 kb on - strand, within ABI39_RS20400 at 5033.662 kb on + strand, within ABI39_RS20400 at 5033.821 kb on + strand at 5033.837 kb on - strand at 5033.843 kb on + strand at 5033.882 kb on - strand at 5033.889 kb on + strand at 5033.945 kb on + strand at 5034.011 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/ml (C) remove 5,031,559 + ABI39_RS20390 0.36 +1.4 5,031,560 - ABI39_RS20390 0.36 -1.2 5,031,780 + ABI39_RS20390 0.51 -0.7 5,031,800 - ABI39_RS20390 0.52 -0.2 5,031,800 - ABI39_RS20390 0.52 -1.8 5,031,800 - ABI39_RS20390 0.52 -0.6 5,031,935 + ABI39_RS20390 0.61 -0.2 5,031,959 + ABI39_RS20390 0.63 +0.0 5,031,959 + ABI39_RS20390 0.63 -0.8 5,031,959 + ABI39_RS20390 0.63 -0.8 5,031,961 + ABI39_RS20390 0.63 -1.0 5,031,962 - ABI39_RS20390 0.63 -1.0 5,031,962 - ABI39_RS20390 0.63 -0.8 5,031,964 - ABI39_RS20390 0.63 -2.0 5,031,986 + ABI39_RS20390 0.64 -0.9 5,032,013 - ABI39_RS20390 0.66 -2.2 5,032,014 + ABI39_RS20390 0.66 +0.7 5,032,014 + ABI39_RS20390 0.66 -0.6 5,032,015 - ABI39_RS20390 0.66 -3.4 5,032,015 - ABI39_RS20390 0.66 -2.6 5,032,015 - ABI39_RS20390 0.66 -1.6 5,032,065 + ABI39_RS20390 0.70 -0.6 5,032,070 - ABI39_RS20390 0.70 -0.2 5,032,228 + ABI39_RS20390 0.80 +1.0 5,032,365 - ABI39_RS20390 0.89 -1.2 5,032,405 + -3.1 5,032,472 + -0.1 5,032,532 - -2.6 5,032,706 - ABI39_RS20395 0.28 -1.8 5,032,706 - ABI39_RS20395 0.28 -1.8 5,032,707 + ABI39_RS20395 0.28 -1.2 5,032,708 - ABI39_RS20395 0.28 -2.6 5,032,751 + ABI39_RS20395 0.35 -0.2 5,032,760 + ABI39_RS20395 0.36 -1.5 5,032,856 + ABI39_RS20395 0.52 -2.8 5,032,973 + ABI39_RS20395 0.70 -1.2 5,033,244 + -0.2 5,033,410 - ABI39_RS20400 0.36 -0.2 5,033,532 + ABI39_RS20400 0.61 -0.6 5,033,557 - ABI39_RS20400 0.65 +0.7 5,033,662 + ABI39_RS20400 0.86 +1.2 5,033,821 + -0.5 5,033,837 - +0.7 5,033,843 + +0.3 5,033,882 - +1.0 5,033,889 + +0.2 5,033,945 + -0.8 5,034,011 - -0.4
Or see this region's nucleotide sequence