Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS17945

Experiment: beta-Cyclodextrin 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	beta-Cyclodextrin 2.5 mg/ml (C)
4,524,856	+		ABI39_RS17940	0.67	-0.2
4,524,971	+		ABI39_RS17940	0.72	-1.3
4,524,991	+		ABI39_RS17940	0.73	-0.0
4,525,011	+		ABI39_RS17940	0.74	-1.0
4,525,012	-		ABI39_RS17940	0.74	-1.2
4,525,012	-		ABI39_RS17940	0.74	-0.7
4,525,012	-		ABI39_RS17940	0.74	-1.9
4,525,032	+		ABI39_RS17940	0.75	-0.4
4,525,092	+		ABI39_RS17940	0.77	-0.6
4,525,093	-		ABI39_RS17940	0.77	-0.3
4,525,093	-		ABI39_RS17940	0.77	-0.4
4,525,093	-		ABI39_RS17940	0.77	-0.2
4,525,115	+		ABI39_RS17940	0.78	-0.3
4,525,115	+		ABI39_RS17940	0.78	-0.3
4,525,176	-		ABI39_RS17940	0.81	+0.8
4,525,210	+		ABI39_RS17940	0.83	-0.6
4,525,236	+		ABI39_RS17940	0.84	-1.3
4,525,240	-		ABI39_RS17940	0.84	-1.2
4,525,267	+		ABI39_RS17940	0.85	-0.8
4,525,377	+				-0.8
4,525,378	-				-1.4
4,525,378	-				+0.1
4,525,405	+				-0.1
4,525,576	+				-1.8
4,525,576	+				-0.5
4,525,578	+				-0.6
4,525,579	-				-0.1
4,525,581	-				+0.6
4,525,581	-				+0.3
4,525,622	+				+0.2
4,525,710	-				-2.0
4,525,853	+				-3.0
4,525,876	+				-2.4
4,525,877	-				+0.8
4,525,893	-				-3.5
4,526,009	-		ABI39_RS17945	0.11	-0.6
4,526,107	-		ABI39_RS17945	0.16	-1.6
4,526,184	+		ABI39_RS17945	0.19	-0.8
4,526,239	-		ABI39_RS17945	0.22	-1.7
4,526,254	+		ABI39_RS17945	0.22	-2.8
4,526,254	+		ABI39_RS17945	0.22	-2.7
4,526,397	+		ABI39_RS17945	0.29	-1.9
4,526,422	-		ABI39_RS17945	0.30	-1.4
4,526,436	+		ABI39_RS17945	0.31	-2.5
4,526,437	-		ABI39_RS17945	0.31	-2.1
4,526,438	+		ABI39_RS17945	0.31	-1.8
4,526,439	-		ABI39_RS17945	0.31	-1.7
4,526,439	-		ABI39_RS17945	0.31	-0.2
4,526,575	-		ABI39_RS17945	0.37	-2.7
4,526,670	+		ABI39_RS17945	0.41	-3.5
4,526,691	+		ABI39_RS17945	0.42	-2.2
4,526,691	+		ABI39_RS17945	0.42	-2.2
4,526,695	-		ABI39_RS17945	0.43	-2.7
4,526,740	-		ABI39_RS17945	0.45	-1.5
4,526,740	-		ABI39_RS17945	0.45	-2.5
4,526,886	+		ABI39_RS17945	0.51	-2.2
4,526,903	-		ABI39_RS17945	0.52	-1.2
4,526,930	-		ABI39_RS17945	0.53	-2.9
4,526,992	+		ABI39_RS17945	0.56	-1.5
4,527,019	+		ABI39_RS17945	0.57	-2.8
4,527,024	+		ABI39_RS17945	0.58	-0.7
4,527,273	+		ABI39_RS17945	0.69	-2.7
4,527,285	+		ABI39_RS17945	0.69	-2.5
4,527,317	+		ABI39_RS17945	0.71	-1.4
4,527,318	-		ABI39_RS17945	0.71	-3.7
4,527,325	-		ABI39_RS17945	0.71	-3.7
4,527,328	-		ABI39_RS17945	0.71	-3.4
4,527,422	-		ABI39_RS17945	0.76	+0.8
4,527,579	+		ABI39_RS17945	0.83	-2.8
4,527,580	-		ABI39_RS17945	0.83	-3.8
4,527,580	-		ABI39_RS17945	0.83	-3.2
4,527,642	+		ABI39_RS17945	0.86	-2.3
4,527,660	+		ABI39_RS17945	0.87	-3.2
4,527,669	+		ABI39_RS17945	0.87	-2.0
4,527,721	-		ABI39_RS17945	0.89	-1.0
4,527,976	+				-0.8
4,528,023	+				-0.2
4,528,130	+				-0.2
4,528,156	-				-0.2
4,528,166	+				-2.8
4,528,179	-				-1.2
4,528,250	-		ABI39_RS17950	0.19	-0.2
4,528,278	+		ABI39_RS17950	0.23	-1.8
4,528,615	-		ABI39_RS17950	0.71	-1.8
4,528,642	-		ABI39_RS17950	0.75	-2.2
4,528,683	-		ABI39_RS17950	0.81	-2.8
4,528,695	+		ABI39_RS17950	0.83	-1.8
4,528,893	+				-0.2
4,528,919	+				+0.1