Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS17420

Experiment: beta-Cyclodextrin 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	beta-Cyclodextrin 2.5 mg/ml (C)
4,397,838	-		ABI39_RS17415	0.27	+0.2
4,397,842	+		ABI39_RS17415	0.27	+0.7
4,397,843	-		ABI39_RS17415	0.27	-0.5
4,397,906	+		ABI39_RS17415	0.36	-0.9
4,397,910	+		ABI39_RS17415	0.37	-1.0
4,397,910	+		ABI39_RS17415	0.37	-1.6
4,397,913	-		ABI39_RS17415	0.37	+0.1
4,397,921	+		ABI39_RS17415	0.38	-0.0
4,397,964	-		ABI39_RS17415	0.44	+1.1
4,398,017	+		ABI39_RS17415	0.52	-1.0
4,398,020	-		ABI39_RS17415	0.52	-1.8
4,398,022	+		ABI39_RS17415	0.52	+1.2
4,398,022	+		ABI39_RS17415	0.52	-0.5
4,398,031	-		ABI39_RS17415	0.53	+0.7
4,398,032	+		ABI39_RS17415	0.54	+0.0
4,398,033	-		ABI39_RS17415	0.54	-1.4
4,398,086	-		ABI39_RS17415	0.61	-1.2
4,398,090	+		ABI39_RS17415	0.62	-1.0
4,398,091	-		ABI39_RS17415	0.62	-0.3
4,398,145	+		ABI39_RS17415	0.69	-0.7
4,398,210	-		ABI39_RS17415	0.78	+0.4
4,398,212	-		ABI39_RS17415	0.79	-0.3
4,398,249	-		ABI39_RS17415	0.84	-1.6
4,398,293	-		ABI39_RS17415	0.90	-0.4
4,398,399	+				+0.3
4,398,404	+				+1.3
4,398,405	-				+0.2
4,398,405	-				+1.4
4,398,553	-				-4.0
4,398,608	+				-1.6
4,398,760	+		ABI39_RS17420	0.11	-4.0
4,398,772	+		ABI39_RS17420	0.12	-4.2
4,398,876	-		ABI39_RS17420	0.20	-3.8
4,399,015	+		ABI39_RS17420	0.31	-4.1
4,399,016	-		ABI39_RS17420	0.31	-4.1
4,399,016	-		ABI39_RS17420	0.31	-3.0
4,399,031	-		ABI39_RS17420	0.32	-1.2
4,399,110	+		ABI39_RS17420	0.38	-4.7
4,399,148	-		ABI39_RS17420	0.41	-4.5
4,399,406	+		ABI39_RS17420	0.61	-4.2
4,399,418	+		ABI39_RS17420	0.62	-2.4
4,399,668	+		ABI39_RS17420	0.82	-3.7
4,399,686	+		ABI39_RS17420	0.83	-4.6
4,399,824	-				-2.2
4,399,915	-				-2.2
4,399,922	+				-0.9
4,400,009	+				+0.4
4,400,089	-				+0.2
4,400,225	+				+0.2
4,400,277	+		ABI39_RS17425	0.13	+0.0
4,400,367	+		ABI39_RS17425	0.20	-0.9
4,400,410	-		ABI39_RS17425	0.23	+2.3
4,400,411	+		ABI39_RS17425	0.23	-0.0
4,400,468	-		ABI39_RS17425	0.27	+0.4
4,400,468	-		ABI39_RS17425	0.27	+2.0
4,400,486	+		ABI39_RS17425	0.28	+0.4
4,400,639	+		ABI39_RS17425	0.40	+0.5
4,400,717	+		ABI39_RS17425	0.46	+0.8
4,400,723	+		ABI39_RS17425	0.46	+0.3
4,400,731	-		ABI39_RS17425	0.47	+0.5
4,400,735	-		ABI39_RS17425	0.47	+0.5
4,400,781	+		ABI39_RS17425	0.50	-0.1
4,400,802	+		ABI39_RS17425	0.52	-0.1
4,400,828	+		ABI39_RS17425	0.54	+0.3
4,400,847	+		ABI39_RS17425	0.55	+1.4
4,400,848	-		ABI39_RS17425	0.55	+0.6