Experiment: beta-Cyclodextrin 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS17160 and ABI39_RS17165 are separated by 9 nucleotides ABI39_RS17165 and ABI39_RS17170 are separated by 39 nucleotides ABI39_RS17170 and ABI39_RS17175 are separated by 19 nucleotides ABI39_RS17175 and ABI39_RS17180 are separated by 10 nucleotides
ABI39_RS17160: ABI39_RS17160 - VWA domain-containing protein, at 4,340,836 to 4,341,858
_RS17160
ABI39_RS17165: ABI39_RS17165 - tetratricopeptide repeat protein, at 4,341,868 to 4,342,575
_RS17165
ABI39_RS17170: ABI39_RS17170 - protein BatD, at 4,342,615 to 4,344,450
_RS17170
ABI39_RS17175: ABI39_RS17175 - tetratricopeptide repeat protein, at 4,344,470 to 4,345,288
_RS17175
ABI39_RS17180: ABI39_RS17180 - phosphatase PAP2 family protein, at 4,345,299 to 4,346,006
_RS17180
Position (kb) 4342
4343
4344
4345 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4341.646 kb on + strand, within ABI39_RS17160 at 4341.646 kb on + strand, within ABI39_RS17160 at 4341.646 kb on + strand, within ABI39_RS17160 at 4341.657 kb on - strand, within ABI39_RS17160 at 4341.664 kb on - strand, within ABI39_RS17160 at 4341.736 kb on + strand, within ABI39_RS17160 at 4341.808 kb on - strand at 4341.903 kb on - strand at 4341.970 kb on + strand, within ABI39_RS17165 at 4342.643 kb on + strand at 4343.156 kb on - strand, within ABI39_RS17170 at 4343.555 kb on + strand, within ABI39_RS17170 at 4343.595 kb on + strand, within ABI39_RS17170 at 4343.739 kb on - strand, within ABI39_RS17170 at 4343.821 kb on - strand, within ABI39_RS17170 at 4344.010 kb on + strand, within ABI39_RS17170 at 4344.070 kb on - strand, within ABI39_RS17170 at 4344.190 kb on + strand, within ABI39_RS17170 at 4344.191 kb on - strand, within ABI39_RS17170 at 4344.268 kb on - strand at 4344.335 kb on + strand at 4344.336 kb on - strand at 4344.385 kb on - strand at 4344.395 kb on + strand at 4344.397 kb on + strand at 4344.626 kb on + strand, within ABI39_RS17175 at 4344.626 kb on + strand, within ABI39_RS17175 at 4344.628 kb on + strand, within ABI39_RS17175 at 4344.660 kb on + strand, within ABI39_RS17175 at 4344.661 kb on - strand, within ABI39_RS17175 at 4344.661 kb on - strand, within ABI39_RS17175 at 4344.662 kb on + strand, within ABI39_RS17175 at 4344.662 kb on + strand, within ABI39_RS17175 at 4344.663 kb on - strand, within ABI39_RS17175 at 4344.671 kb on - strand, within ABI39_RS17175 at 4344.739 kb on + strand, within ABI39_RS17175 at 4344.841 kb on - strand, within ABI39_RS17175 at 4344.928 kb on + strand, within ABI39_RS17175 at 4344.929 kb on - strand, within ABI39_RS17175 at 4345.105 kb on + strand, within ABI39_RS17175 at 4345.109 kb on - strand, within ABI39_RS17175 at 4345.109 kb on - strand, within ABI39_RS17175 at 4345.110 kb on + strand, within ABI39_RS17175 at 4345.306 kb on + strand at 4345.408 kb on + strand, within ABI39_RS17180 at 4345.435 kb on + strand, within ABI39_RS17180 at 4345.435 kb on + strand, within ABI39_RS17180 at 4345.438 kb on - strand, within ABI39_RS17180 at 4345.438 kb on - strand, within ABI39_RS17180
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/ml (C) remove 4,341,646 + ABI39_RS17160 0.79 -0.2 4,341,646 + ABI39_RS17160 0.79 -0.2 4,341,646 + ABI39_RS17160 0.79 -1.8 4,341,657 - ABI39_RS17160 0.80 -1.2 4,341,664 - ABI39_RS17160 0.81 -0.2 4,341,736 + ABI39_RS17160 0.88 -1.2 4,341,808 - -2.2 4,341,903 - -1.2 4,341,970 + ABI39_RS17165 0.14 -0.2 4,342,643 + -2.2 4,343,156 - ABI39_RS17170 0.29 -1.2 4,343,555 + ABI39_RS17170 0.51 -0.2 4,343,595 + ABI39_RS17170 0.53 -1.2 4,343,739 - ABI39_RS17170 0.61 -1.8 4,343,821 - ABI39_RS17170 0.66 -0.2 4,344,010 + ABI39_RS17170 0.76 -2.2 4,344,070 - ABI39_RS17170 0.79 -1.2 4,344,190 + ABI39_RS17170 0.86 -1.8 4,344,191 - ABI39_RS17170 0.86 -1.2 4,344,268 - -1.8 4,344,335 + -2.2 4,344,336 - -1.2 4,344,385 - -1.2 4,344,395 + -0.2 4,344,397 + -1.2 4,344,626 + ABI39_RS17175 0.19 -2.2 4,344,626 + ABI39_RS17175 0.19 -0.2 4,344,628 + ABI39_RS17175 0.19 -0.8 4,344,660 + ABI39_RS17175 0.23 -2.5 4,344,661 - ABI39_RS17175 0.23 -0.2 4,344,661 - ABI39_RS17175 0.23 -2.5 4,344,662 + ABI39_RS17175 0.23 -2.5 4,344,662 + ABI39_RS17175 0.23 -0.2 4,344,663 - ABI39_RS17175 0.24 -1.8 4,344,671 - ABI39_RS17175 0.25 -0.2 4,344,739 + ABI39_RS17175 0.33 -0.2 4,344,841 - ABI39_RS17175 0.45 -1.2 4,344,928 + ABI39_RS17175 0.56 -1.8 4,344,929 - ABI39_RS17175 0.56 -2.8 4,345,105 + ABI39_RS17175 0.78 -1.8 4,345,109 - ABI39_RS17175 0.78 -1.8 4,345,109 - ABI39_RS17175 0.78 -2.2 4,345,110 + ABI39_RS17175 0.78 -2.2 4,345,306 + -0.6 4,345,408 + ABI39_RS17180 0.15 -1.5 4,345,435 + ABI39_RS17180 0.19 -0.4 4,345,435 + ABI39_RS17180 0.19 -0.7 4,345,438 - ABI39_RS17180 0.20 -1.4 4,345,438 - ABI39_RS17180 0.20 -1.5
Or see this region's nucleotide sequence