Experiment: beta-Cyclodextrin 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS16365 and ABI39_RS16370 overlap by 17 nucleotides ABI39_RS16370 and ABI39_RS16375 are separated by 4 nucleotides ABI39_RS16375 and ABI39_RS16380 are separated by 46 nucleotides ABI39_RS16380 and ABI39_RS16385 are separated by 41 nucleotides ABI39_RS16385 and ABI39_RS16390 are separated by 40 nucleotides
ABI39_RS16365: ABI39_RS16365 - hypothetical protein, at 4,168,113 to 4,168,316
_RS16365
ABI39_RS16370: ABI39_RS16370 - hypothetical protein, at 4,168,300 to 4,168,479
_RS16370
ABI39_RS16375: ABI39_RS16375 - hypothetical protein, at 4,168,484 to 4,168,750
_RS16375
ABI39_RS16380: ABI39_RS16380 - hypothetical protein, at 4,168,797 to 4,169,114
_RS16380
ABI39_RS16385: ABI39_RS16385 - hypothetical protein, at 4,169,156 to 4,169,482
_RS16385
ABI39_RS16390: ABI39_RS16390 - PcfJ family protein, at 4,169,523 to 4,170,806
_RS16390
Position (kb) 4169
4170 Strain fitness (log2 ratio) -1
0
1 at 4168.301 kb on + strand at 4168.734 kb on - strand at 4168.934 kb on - strand, within ABI39_RS16380 at 4169.102 kb on - strand at 4169.157 kb on + strand at 4169.158 kb on - strand at 4169.188 kb on - strand at 4169.188 kb on - strand at 4169.271 kb on - strand, within ABI39_RS16385 at 4169.322 kb on + strand, within ABI39_RS16385 at 4169.464 kb on + strand at 4169.467 kb on - strand at 4169.486 kb on - strand at 4169.524 kb on + strand at 4169.524 kb on + strand at 4169.590 kb on + strand at 4169.716 kb on + strand, within ABI39_RS16390 at 4169.717 kb on - strand, within ABI39_RS16390 at 4169.787 kb on + strand, within ABI39_RS16390 at 4170.150 kb on - strand, within ABI39_RS16390 at 4170.207 kb on + strand, within ABI39_RS16390 at 4170.421 kb on - strand, within ABI39_RS16390 at 4170.479 kb on - strand, within ABI39_RS16390
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/ml (C) remove 4,168,301 + -1.7 4,168,734 - -0.4 4,168,934 - ABI39_RS16380 0.43 +0.0 4,169,102 - -0.0 4,169,157 + -0.2 4,169,158 - +0.3 4,169,188 - -1.5 4,169,188 - -1.2 4,169,271 - ABI39_RS16385 0.35 -1.3 4,169,322 + ABI39_RS16385 0.51 -1.2 4,169,464 + +0.1 4,169,467 - -0.2 4,169,486 - +0.4 4,169,524 + +0.0 4,169,524 + +0.3 4,169,590 + -0.3 4,169,716 + ABI39_RS16390 0.15 -0.1 4,169,717 - ABI39_RS16390 0.15 +0.4 4,169,787 + ABI39_RS16390 0.21 +0.2 4,170,150 - ABI39_RS16390 0.49 +0.3 4,170,207 + ABI39_RS16390 0.53 -0.7 4,170,421 - ABI39_RS16390 0.70 +0.1 4,170,479 - ABI39_RS16390 0.74 -0.0
Or see this region's nucleotide sequence