Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS12970

Experiment: beta-Cyclodextrin 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	beta-Cyclodextrin 2.5 mg/ml (C)
3,391,470	-		ABI39_RS12960	0.87	-1.7
3,391,502	+				-1.4
3,391,570	+				+0.9
3,391,575	+				-2.6
3,391,776	+		ABI39_RS12965	0.23	-1.9
3,391,841	-		ABI39_RS12965	0.30	-2.1
3,391,851	+		ABI39_RS12965	0.31	-2.4
3,391,852	-		ABI39_RS12965	0.32	-1.3
3,391,860	-		ABI39_RS12965	0.33	-2.3
3,391,864	-		ABI39_RS12965	0.33	-1.4
3,391,920	+		ABI39_RS12965	0.40	-4.4
3,391,990	-		ABI39_RS12965	0.48	-1.8
3,392,006	+		ABI39_RS12965	0.50	+0.7
3,392,007	-		ABI39_RS12965	0.50	-1.8
3,392,007	-		ABI39_RS12965	0.50	-2.8
3,392,120	-		ABI39_RS12965	0.63	-2.6
3,392,257	-		ABI39_RS12965	0.79	-1.0
3,392,334	-		ABI39_RS12965	0.88	-2.1
3,392,435	-				-2.0
3,392,470	-				-2.3
3,392,608	-		ABI39_RS12970	0.18	-1.3
3,392,611	+		ABI39_RS12970	0.18	-2.5
3,392,668	-		ABI39_RS12970	0.24	-2.4
3,392,923	+		ABI39_RS12970	0.51	-0.9
3,392,937	-		ABI39_RS12970	0.52	-1.3
3,392,948	-		ABI39_RS12970	0.53	-1.6
3,392,955	+		ABI39_RS12970	0.54	-3.1
3,393,080	+		ABI39_RS12970	0.67	-3.1
3,393,126	-		ABI39_RS12970	0.72	-1.7
3,393,158	-		ABI39_RS12970	0.75	-2.2
3,393,215	-		ABI39_RS12970	0.81	-4.1
3,393,232	+		ABI39_RS12970	0.83	-0.3
3,393,240	-		ABI39_RS12970	0.84	-1.4
3,393,255	-		ABI39_RS12970	0.86	-0.3
3,393,287	+		ABI39_RS12970	0.89	-2.5
3,393,321	+				-2.2
3,393,366	+				-0.3
3,393,366	+				-0.0
3,393,366	+				+0.6
3,393,367	-				-2.6
3,393,367	-				-3.1
3,393,369	-				-3.3
3,393,369	-				+0.3
3,393,369	-				-1.3
3,393,397	-				-1.3
3,393,544	+		ABI39_RS12975	0.16	-0.8
3,393,544	+		ABI39_RS12975	0.16	-0.9
3,393,573	+		ABI39_RS12975	0.18	+0.4
3,393,574	-		ABI39_RS12975	0.19	-1.3
3,393,624	+		ABI39_RS12975	0.23	+0.0
3,393,716	-		ABI39_RS12975	0.33	-2.6
3,393,747	+		ABI39_RS12975	0.36	+0.0
3,393,811	+		ABI39_RS12975	0.42	-0.0
3,393,950	-		ABI39_RS12975	0.56	-2.6
3,393,950	-		ABI39_RS12975	0.56	-3.1
3,393,950	-		ABI39_RS12975	0.56	-1.8
3,393,951	+		ABI39_RS12975	0.56	+0.1
3,394,050	+		ABI39_RS12975	0.66	-1.1
3,394,050	+		ABI39_RS12975	0.66	-1.0
3,394,063	+		ABI39_RS12975	0.67	-0.8
3,394,295	-				-0.3
3,394,380	+				+1.1