Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS12960

Experiment: beta-Cyclodextrin 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	beta-Cyclodextrin 2.5 mg/ml (C)
3,389,854	-		ABI39_RS12955	0.13	-2.3
3,389,862	-		ABI39_RS12955	0.14	-3.4
3,390,087	-		ABI39_RS12955	0.35	-0.3
3,390,131	+		ABI39_RS12955	0.39	-2.6
3,390,132	-		ABI39_RS12955	0.39	-2.3
3,390,257	+		ABI39_RS12955	0.50	-3.8
3,390,257	+		ABI39_RS12955	0.50	-1.3
3,390,293	-		ABI39_RS12955	0.53	-2.8
3,390,326	-		ABI39_RS12955	0.56	-1.5
3,390,394	+		ABI39_RS12955	0.62	-2.4
3,390,480	+		ABI39_RS12955	0.70	-1.8
3,390,481	-		ABI39_RS12955	0.70	-3.3
3,390,511	-		ABI39_RS12955	0.73	-4.0
3,390,568	-		ABI39_RS12955	0.78	-3.1
3,390,568	-		ABI39_RS12955	0.78	-2.8
3,390,673	-		ABI39_RS12955	0.88	-2.3
3,390,738	-				-1.1
3,390,747	+				+0.1
3,390,782	-				-0.3
3,390,865	-				-1.7
3,390,963	-		ABI39_RS12960	0.16	-0.3
3,391,009	-		ABI39_RS12960	0.22	-3.2
3,391,049	+		ABI39_RS12960	0.28	-0.8
3,391,092	+		ABI39_RS12960	0.34	-1.3
3,391,166	+		ABI39_RS12960	0.44	-1.4
3,391,166	+		ABI39_RS12960	0.44	-0.4
3,391,167	-		ABI39_RS12960	0.45	-2.2
3,391,169	+		ABI39_RS12960	0.45	-1.5
3,391,237	+		ABI39_RS12960	0.54	-2.0
3,391,348	-		ABI39_RS12960	0.70	-2.3
3,391,417	-		ABI39_RS12960	0.80	-3.6
3,391,470	-		ABI39_RS12960	0.87	-1.7
3,391,502	+				-1.4
3,391,570	+				+0.9
3,391,575	+				-2.6
3,391,776	+		ABI39_RS12965	0.23	-1.9
3,391,841	-		ABI39_RS12965	0.30	-2.1
3,391,851	+		ABI39_RS12965	0.31	-2.4
3,391,852	-		ABI39_RS12965	0.32	-1.3
3,391,860	-		ABI39_RS12965	0.33	-2.3
3,391,864	-		ABI39_RS12965	0.33	-1.4
3,391,920	+		ABI39_RS12965	0.40	-4.4
3,391,990	-		ABI39_RS12965	0.48	-1.8
3,392,006	+		ABI39_RS12965	0.50	+0.7
3,392,007	-		ABI39_RS12965	0.50	-1.8
3,392,007	-		ABI39_RS12965	0.50	-2.8
3,392,120	-		ABI39_RS12965	0.63	-2.6
3,392,257	-		ABI39_RS12965	0.79	-1.0
3,392,334	-		ABI39_RS12965	0.88	-2.1
3,392,435	-				-2.0
3,392,470	-				-2.3