Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS11545

Experiment: beta-Cyclodextrin 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	beta-Cyclodextrin 2.5 mg/ml (C)
3,069,909	-		ABI39_RS11540	0.59	-0.7
3,069,925	-		ABI39_RS11540	0.60	-0.5
3,070,093	+		ABI39_RS11540	0.70	+0.4
3,070,135	+		ABI39_RS11540	0.73	+0.2
3,070,156	+		ABI39_RS11540	0.74	+0.5
3,070,157	-		ABI39_RS11540	0.74	+0.2
3,070,161	-		ABI39_RS11540	0.74	+0.7
3,070,195	+		ABI39_RS11540	0.76	-0.1
3,070,234	+		ABI39_RS11540	0.79	-0.4
3,070,234	+		ABI39_RS11540	0.79	-0.4
3,070,237	-		ABI39_RS11540	0.79	-0.5
3,070,337	+		ABI39_RS11540	0.85	-1.0
3,070,341	-		ABI39_RS11540	0.85	+1.1
3,070,346	+		ABI39_RS11540	0.85	-0.1
3,070,348	+		ABI39_RS11540	0.86	-0.0
3,070,352	-		ABI39_RS11540	0.86	+0.3
3,070,405	-		ABI39_RS11540	0.89	-2.2
3,070,405	-		ABI39_RS11540	0.89	-0.1
3,070,405	-		ABI39_RS11540	0.89	+2.1
3,070,441	+				+0.7
3,070,478	-				+1.8
3,070,481	-				-2.7
3,070,483	-				+0.6
3,070,484	+				+1.5
3,070,518	-				-0.4
3,070,539	+				+0.6
3,070,567	-				-0.4
3,070,650	+				+0.5
3,070,650	+				+1.1
3,070,650	+				+0.4
3,070,652	+				+0.8
3,070,653	-				-0.7
3,070,653	-				-0.7
3,070,653	-				+1.5
3,070,653	-				-0.3
3,070,801	+				-2.5
3,070,910	+				+0.4
3,071,021	-		ABI39_RS11545	0.14	-1.8
3,071,069	+		ABI39_RS11545	0.17	-1.2
3,071,071	+		ABI39_RS11545	0.17	-2.4
3,071,119	+		ABI39_RS11545	0.21	-1.8
3,071,127	-		ABI39_RS11545	0.21	-3.5
3,071,307	+		ABI39_RS11545	0.34	-1.8
3,071,309	+		ABI39_RS11545	0.34	-3.0
3,071,324	+		ABI39_RS11545	0.35	-1.8
3,071,325	-		ABI39_RS11545	0.35	-1.8
3,071,435	+		ABI39_RS11545	0.43	-2.4
3,071,436	-		ABI39_RS11545	0.43	-3.0
3,071,448	-		ABI39_RS11545	0.44	-1.8
3,071,608	-		ABI39_RS11545	0.56	-1.2
3,071,624	-		ABI39_RS11545	0.57	-1.2
3,071,629	+		ABI39_RS11545	0.57	-0.8
3,071,629	+		ABI39_RS11545	0.57	-1.2
3,071,630	-		ABI39_RS11545	0.57	-1.8
3,071,630	-		ABI39_RS11545	0.57	-2.2
3,071,633	+		ABI39_RS11545	0.58	-2.5
3,071,675	+		ABI39_RS11545	0.61	-2.8
3,071,740	+		ABI39_RS11545	0.65	-1.8
3,071,740	+		ABI39_RS11545	0.65	-4.0
3,071,741	-		ABI39_RS11545	0.65	-1.6
3,071,761	+		ABI39_RS11545	0.67	-1.2
3,071,933	+		ABI39_RS11545	0.79	-2.1
3,071,936	-		ABI39_RS11545	0.79	-0.2
3,072,071	-		ABI39_RS11545	0.89	-0.4
3,072,077	-		ABI39_RS11545	0.89	+0.0
3,072,100	+				-0.7
3,072,107	+				-0.4
3,072,108	-				-1.2
3,072,241	+				-0.7
3,072,242	-				-0.2
3,072,255	+				+0.3
3,072,428	+		ABI39_RS11550	0.10	+0.9
3,072,428	+		ABI39_RS11550	0.10	-1.4
3,072,430	+		ABI39_RS11550	0.10	-0.3
3,072,431	-		ABI39_RS11550	0.10	+0.5
3,072,439	+		ABI39_RS11550	0.11	-0.6
3,072,477	-		ABI39_RS11550	0.13	-1.0
3,072,593	+		ABI39_RS11550	0.21	-0.5
3,072,649	-		ABI39_RS11550	0.24	+1.2
3,072,795	+		ABI39_RS11550	0.33	-1.7
3,072,827	-		ABI39_RS11550	0.35	-0.9
3,072,933	-		ABI39_RS11550	0.42	-0.1
3,072,948	-		ABI39_RS11550	0.43	-1.8
3,073,044	-		ABI39_RS11550	0.49	-0.2
3,073,097	+		ABI39_RS11550	0.53	-1.2
3,073,111	-		ABI39_RS11550	0.53	+0.0
3,073,116	-		ABI39_RS11550	0.54	-1.6
3,073,159	+		ABI39_RS11550	0.57	+0.6
3,073,218	+		ABI39_RS11550	0.60	-0.3