Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS09230

Experiment: beta-Cyclodextrin 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS09220 and ABI39_RS09225 are separated by 3 nucleotidesABI39_RS09225 and ABI39_RS09230 overlap by 38 nucleotidesABI39_RS09230 and ABI39_RS09235 are separated by 89 nucleotides ABI39_RS09220: ABI39_RS09220 - rod shape-determining protein RodA, at 2,488,131 to 2,489,585 _RS09220 ABI39_RS09225: ABI39_RS09225 - gliding motility lipoprotein GldH, at 2,489,589 to 2,490,086 _RS09225 ABI39_RS09230: ABI39_RS09230 - hypothetical protein, at 2,490,049 to 2,491,563 _RS09230 ABI39_RS09235: ABI39_RS09235 - DNA polymerase III subunit delta, at 2,491,653 to 2,492,777 _RS09235 Position (kb) 2490 2491 2492Strain fitness (log2 ratio) -2 -1 0 1at 2489.995 kb on + strand, within ABI39_RS09225at 2490.058 kb on - strandat 2490.661 kb on - strand, within ABI39_RS09230at 2490.733 kb on - strand, within ABI39_RS09230at 2490.792 kb on - strand, within ABI39_RS09230at 2491.607 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/ml (C)
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2,489,995 + ABI39_RS09225 0.82 -0.3
2,490,058 - -0.3
2,490,661 - ABI39_RS09230 0.40 -1.7
2,490,733 - ABI39_RS09230 0.45 -0.9
2,490,792 - ABI39_RS09230 0.49 -2.7
2,491,607 - -1.4

Or see this region's nucleotide sequence