Experiment: beta-Cyclodextrin 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02975 and ABI39_RS02980 are separated by 107 nucleotides ABI39_RS02980 and ABI39_RS02985 are separated by 23 nucleotides ABI39_RS02985 and ABI39_RS02990 are separated by 307 nucleotides
ABI39_RS02975: ABI39_RS02975 - argininosuccinate synthase, at 867,284 to 868,492
_RS02975
ABI39_RS02980: ABI39_RS02980 - N-acetyltransferase, at 868,600 to 869,157
_RS02980
ABI39_RS02985: ABI39_RS02985 - arginine repressor, at 869,181 to 869,657
_RS02985
ABI39_RS02990: ABI39_RS02990 - rhamnulokinase, at 869,965 to 871,443
_RS02990
Position (kb) 869
870 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 868.221 kb on + strand, within ABI39_RS02975 at 868.222 kb on - strand, within ABI39_RS02975 at 868.222 kb on - strand, within ABI39_RS02975 at 868.225 kb on + strand, within ABI39_RS02975 at 868.279 kb on - strand, within ABI39_RS02975 at 868.305 kb on + strand, within ABI39_RS02975 at 868.423 kb on - strand at 868.539 kb on - strand at 868.684 kb on - strand, within ABI39_RS02980 at 868.760 kb on + strand, within ABI39_RS02980 at 868.825 kb on - strand, within ABI39_RS02980 at 868.883 kb on - strand, within ABI39_RS02980 at 868.896 kb on + strand, within ABI39_RS02980 at 868.924 kb on + strand, within ABI39_RS02980 at 868.959 kb on + strand, within ABI39_RS02980 at 869.027 kb on + strand, within ABI39_RS02980 at 869.079 kb on + strand, within ABI39_RS02980 at 869.082 kb on + strand, within ABI39_RS02980 at 869.175 kb on - strand at 869.177 kb on + strand at 869.179 kb on + strand at 869.188 kb on - strand at 869.258 kb on + strand, within ABI39_RS02985 at 869.262 kb on - strand, within ABI39_RS02985 at 869.264 kb on + strand, within ABI39_RS02985 at 869.280 kb on - strand, within ABI39_RS02985 at 869.315 kb on + strand, within ABI39_RS02985 at 869.316 kb on - strand, within ABI39_RS02985 at 869.334 kb on - strand, within ABI39_RS02985 at 869.334 kb on - strand, within ABI39_RS02985 at 869.466 kb on + strand, within ABI39_RS02985 at 869.467 kb on - strand, within ABI39_RS02985 at 869.471 kb on - strand, within ABI39_RS02985 at 869.471 kb on - strand, within ABI39_RS02985 at 869.471 kb on - strand, within ABI39_RS02985 at 869.472 kb on + strand, within ABI39_RS02985 at 869.619 kb on - strand at 869.690 kb on + strand at 869.770 kb on - strand at 869.778 kb on - strand at 869.783 kb on + strand at 869.839 kb on - strand at 869.860 kb on + strand at 869.882 kb on - strand at 869.882 kb on - strand at 870.023 kb on + strand at 870.081 kb on + strand at 870.119 kb on - strand, within ABI39_RS02990 at 870.128 kb on - strand, within ABI39_RS02990 at 870.138 kb on + strand, within ABI39_RS02990 at 870.282 kb on - strand, within ABI39_RS02990 at 870.298 kb on + strand, within ABI39_RS02990 at 870.328 kb on + strand, within ABI39_RS02990 at 870.377 kb on + strand, within ABI39_RS02990 at 870.423 kb on + strand, within ABI39_RS02990 at 870.436 kb on - strand, within ABI39_RS02990 at 870.449 kb on + strand, within ABI39_RS02990 at 870.450 kb on - strand, within ABI39_RS02990
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/ml (C) remove 868,221 + ABI39_RS02975 0.78 -4.3 868,222 - ABI39_RS02975 0.78 -4.4 868,222 - ABI39_RS02975 0.78 -5.9 868,225 + ABI39_RS02975 0.78 -5.2 868,279 - ABI39_RS02975 0.82 -3.9 868,305 + ABI39_RS02975 0.84 -5.1 868,423 - -4.3 868,539 - -1.9 868,684 - ABI39_RS02980 0.15 -5.4 868,760 + ABI39_RS02980 0.29 -4.4 868,825 - ABI39_RS02980 0.40 -5.5 868,883 - ABI39_RS02980 0.51 -3.4 868,896 + ABI39_RS02980 0.53 -4.3 868,924 + ABI39_RS02980 0.58 -5.1 868,959 + ABI39_RS02980 0.64 -3.8 869,027 + ABI39_RS02980 0.77 -5.1 869,079 + ABI39_RS02980 0.86 -5.2 869,082 + ABI39_RS02980 0.86 -4.3 869,175 - -3.5 869,177 + -4.9 869,179 + -4.9 869,188 - -0.9 869,258 + ABI39_RS02985 0.16 -4.3 869,262 - ABI39_RS02985 0.17 -2.5 869,264 + ABI39_RS02985 0.17 -4.0 869,280 - ABI39_RS02985 0.21 -1.1 869,315 + ABI39_RS02985 0.28 -6.5 869,316 - ABI39_RS02985 0.28 -1.9 869,334 - ABI39_RS02985 0.32 -1.0 869,334 - ABI39_RS02985 0.32 -1.5 869,466 + ABI39_RS02985 0.60 -3.3 869,467 - ABI39_RS02985 0.60 -1.3 869,471 - ABI39_RS02985 0.61 -2.2 869,471 - ABI39_RS02985 0.61 -0.9 869,471 - ABI39_RS02985 0.61 -1.1 869,472 + ABI39_RS02985 0.61 -3.9 869,619 - -1.5 869,690 + -4.1 869,770 - +0.1 869,778 - -0.1 869,783 + -0.5 869,839 - -0.3 869,860 + +0.2 869,882 - +0.1 869,882 - +0.0 870,023 + +0.4 870,081 + +0.1 870,119 - ABI39_RS02990 0.10 -0.5 870,128 - ABI39_RS02990 0.11 +1.4 870,138 + ABI39_RS02990 0.12 +0.4 870,282 - ABI39_RS02990 0.21 +0.5 870,298 + ABI39_RS02990 0.23 -1.9 870,328 + ABI39_RS02990 0.25 -1.0 870,377 + ABI39_RS02990 0.28 +0.2 870,423 + ABI39_RS02990 0.31 +0.1 870,436 - ABI39_RS02990 0.32 -0.9 870,449 + ABI39_RS02990 0.33 +0.0 870,450 - ABI39_RS02990 0.33 +0.3
Or see this region's nucleotide sequence