Experiment: beta-Cyclodextrin 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02280 and ABI39_RS02285 are separated by 228 nucleotides ABI39_RS02285 and ABI39_RS02290 are separated by 21 nucleotides ABI39_RS02290 and ABI39_RS02295 are separated by 2 nucleotides
ABI39_RS02280: ABI39_RS02280 - BamA/TamA family outer membrane protein, at 664,060 to 665,268
_RS02280
ABI39_RS02285: ABI39_RS02285 - DNA mismatch repair endonuclease MutL, at 665,497 to 667,365
_RS02285
ABI39_RS02290: ABI39_RS02290 - hypothetical protein, at 667,387 to 667,683
_RS02290
ABI39_RS02295: ABI39_RS02295 - hypothetical protein, at 667,686 to 669,353
_RS02295
Position (kb) 665
666
667
668 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 664.536 kb on - strand, within ABI39_RS02280 at 664.569 kb on + strand, within ABI39_RS02280 at 664.570 kb on - strand, within ABI39_RS02280 at 664.601 kb on + strand, within ABI39_RS02280 at 664.653 kb on + strand, within ABI39_RS02280 at 664.719 kb on - strand, within ABI39_RS02280 at 664.759 kb on - strand, within ABI39_RS02280 at 665.032 kb on - strand, within ABI39_RS02280 at 665.103 kb on + strand, within ABI39_RS02280 at 665.106 kb on + strand, within ABI39_RS02280 at 665.109 kb on - strand, within ABI39_RS02280 at 665.113 kb on + strand, within ABI39_RS02280 at 665.115 kb on + strand, within ABI39_RS02280 at 665.190 kb on + strand at 665.191 kb on - strand at 665.195 kb on - strand at 665.251 kb on - strand at 665.273 kb on + strand at 665.462 kb on - strand at 665.563 kb on - strand at 665.565 kb on - strand at 665.588 kb on - strand at 665.948 kb on + strand, within ABI39_RS02285 at 665.948 kb on + strand, within ABI39_RS02285 at 665.948 kb on + strand, within ABI39_RS02285 at 665.957 kb on + strand, within ABI39_RS02285 at 665.960 kb on - strand, within ABI39_RS02285 at 667.366 kb on - strand at 667.368 kb on - strand at 667.368 kb on - strand at 667.368 kb on - strand at 667.375 kb on - strand at 667.510 kb on - strand, within ABI39_RS02290 at 667.510 kb on - strand, within ABI39_RS02290 at 667.632 kb on - strand, within ABI39_RS02290 at 667.636 kb on - strand, within ABI39_RS02290 at 667.638 kb on - strand, within ABI39_RS02290 at 667.688 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/ml (C) remove 664,536 - ABI39_RS02280 0.39 +0.5 664,569 + ABI39_RS02280 0.42 -0.0 664,570 - ABI39_RS02280 0.42 -1.2 664,601 + ABI39_RS02280 0.45 +0.6 664,653 + ABI39_RS02280 0.49 +0.0 664,719 - ABI39_RS02280 0.55 -0.1 664,759 - ABI39_RS02280 0.58 +0.0 665,032 - ABI39_RS02280 0.80 -1.4 665,103 + ABI39_RS02280 0.86 -0.1 665,106 + ABI39_RS02280 0.87 +0.4 665,109 - ABI39_RS02280 0.87 +0.1 665,113 + ABI39_RS02280 0.87 +2.4 665,115 + ABI39_RS02280 0.87 +0.8 665,190 + +0.0 665,191 - +0.0 665,195 - -0.2 665,251 - +0.1 665,273 + +0.8 665,462 - +0.9 665,563 - -0.3 665,565 - -0.1 665,588 - -0.2 665,948 + ABI39_RS02285 0.24 +0.7 665,948 + ABI39_RS02285 0.24 -2.5 665,948 + ABI39_RS02285 0.24 -0.8 665,957 + ABI39_RS02285 0.25 -2.9 665,960 - ABI39_RS02285 0.25 +1.0 667,366 - -1.1 667,368 - -0.5 667,368 - +0.7 667,368 - -0.1 667,375 - +0.3 667,510 - ABI39_RS02290 0.41 -2.3 667,510 - ABI39_RS02290 0.41 -2.9 667,632 - ABI39_RS02290 0.82 -0.9 667,636 - ABI39_RS02290 0.84 -2.5 667,638 - ABI39_RS02290 0.85 -1.6 667,688 - -1.5
Or see this region's nucleotide sequence