Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS00570

Experiment: beta-Cyclodextrin 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABI39_RS00565 and ABI39_RS00570 are separated by 154 nucleotidesABI39_RS00570 and ABI39_RS00575 are separated by 150 nucleotides ABI39_RS00565: ABI39_RS00565 - glycosyl hydrolase 43 family protein, at 156,844 to 158,493 _RS00565 ABI39_RS00570: ABI39_RS00570 - glycoside hydrolase family 97 protein, at 158,648 to 160,585 _RS00570 ABI39_RS00575: ABI39_RS00575 - hypothetical protein, at 160,736 to 163,372 _RS00575 Position (kb) 158 159 160 161Strain fitness (log2 ratio) -1 0 1at 157.665 kb on + strand, within ABI39_RS00565at 157.703 kb on - strand, within ABI39_RS00565at 157.704 kb on + strand, within ABI39_RS00565at 157.705 kb on - strand, within ABI39_RS00565at 157.710 kb on + strand, within ABI39_RS00565at 157.821 kb on - strand, within ABI39_RS00565at 157.944 kb on + strand, within ABI39_RS00565at 158.026 kb on - strand, within ABI39_RS00565at 158.033 kb on - strand, within ABI39_RS00565at 158.098 kb on + strand, within ABI39_RS00565at 158.110 kb on - strand, within ABI39_RS00565at 158.137 kb on - strand, within ABI39_RS00565at 158.137 kb on - strand, within ABI39_RS00565at 158.238 kb on - strand, within ABI39_RS00565at 158.385 kb on + strandat 158.387 kb on + strandat 158.430 kb on - strandat 158.476 kb on - strandat 158.497 kb on + strandat 158.552 kb on - strandat 158.601 kb on + strandat 158.602 kb on - strandat 158.603 kb on + strandat 158.607 kb on - strandat 158.654 kb on + strandat 158.675 kb on - strandat 158.685 kb on - strandat 158.829 kb on + strandat 158.902 kb on + strand, within ABI39_RS00570at 158.915 kb on + strand, within ABI39_RS00570at 158.953 kb on + strand, within ABI39_RS00570at 158.959 kb on + strand, within ABI39_RS00570at 158.978 kb on + strand, within ABI39_RS00570at 158.979 kb on - strand, within ABI39_RS00570at 159.060 kb on + strand, within ABI39_RS00570at 159.158 kb on - strand, within ABI39_RS00570at 159.158 kb on - strand, within ABI39_RS00570at 159.160 kb on - strand, within ABI39_RS00570at 159.175 kb on + strand, within ABI39_RS00570at 159.182 kb on - strand, within ABI39_RS00570at 159.206 kb on - strand, within ABI39_RS00570at 159.422 kb on - strand, within ABI39_RS00570at 159.477 kb on + strand, within ABI39_RS00570at 159.584 kb on - strand, within ABI39_RS00570at 159.586 kb on - strand, within ABI39_RS00570at 159.610 kb on - strand, within ABI39_RS00570at 159.683 kb on - strand, within ABI39_RS00570at 159.809 kb on - strand, within ABI39_RS00570at 159.840 kb on + strand, within ABI39_RS00570at 159.841 kb on - strand, within ABI39_RS00570at 159.908 kb on + strand, within ABI39_RS00570at 160.087 kb on + strand, within ABI39_RS00570at 160.155 kb on - strand, within ABI39_RS00570at 160.200 kb on + strand, within ABI39_RS00570at 160.201 kb on - strand, within ABI39_RS00570at 160.207 kb on + strand, within ABI39_RS00570at 160.207 kb on + strand, within ABI39_RS00570at 160.207 kb on + strand, within ABI39_RS00570at 160.208 kb on - strand, within ABI39_RS00570at 160.284 kb on + strand, within ABI39_RS00570at 160.288 kb on + strand, within ABI39_RS00570at 160.288 kb on + strand, within ABI39_RS00570at 160.419 kb on + strandat 160.565 kb on + strandat 160.607 kb on + strandat 160.752 kb on + strandat 160.753 kb on - strandat 160.853 kb on + strandat 160.853 kb on + strandat 160.915 kb on - strandat 161.002 kb on + strand, within ABI39_RS00575at 161.110 kb on + strand, within ABI39_RS00575at 161.162 kb on - strand, within ABI39_RS00575at 161.301 kb on - strand, within ABI39_RS00575at 161.327 kb on - strand, within ABI39_RS00575at 161.355 kb on + strand, within ABI39_RS00575at 161.356 kb on - strand, within ABI39_RS00575at 161.459 kb on - strand, within ABI39_RS00575at 161.473 kb on + strand, within ABI39_RS00575at 161.477 kb on + strand, within ABI39_RS00575at 161.533 kb on - strand, within ABI39_RS00575

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/ml (C)
remove
157,665 + ABI39_RS00565 0.50 +0.3
157,703 - ABI39_RS00565 0.52 -1.2
157,704 + ABI39_RS00565 0.52 -1.2
157,705 - ABI39_RS00565 0.52 -0.7
157,710 + ABI39_RS00565 0.52 +0.1
157,821 - ABI39_RS00565 0.59 +0.5
157,944 + ABI39_RS00565 0.67 +0.8
158,026 - ABI39_RS00565 0.72 -0.9
158,033 - ABI39_RS00565 0.72 +0.1
158,098 + ABI39_RS00565 0.76 +0.0
158,110 - ABI39_RS00565 0.77 -0.4
158,137 - ABI39_RS00565 0.78 -1.5
158,137 - ABI39_RS00565 0.78 -0.1
158,238 - ABI39_RS00565 0.84 +0.5
158,385 + +0.0
158,387 + +0.7
158,430 - -0.2
158,476 - +0.2
158,497 + -0.3
158,552 - +0.5
158,601 + +0.1
158,602 - +1.0
158,603 + -0.1
158,607 - -1.2
158,654 + +0.4
158,675 - -0.2
158,685 - +0.8
158,829 + +0.6
158,902 + ABI39_RS00570 0.13 -1.3
158,915 + ABI39_RS00570 0.14 +0.4
158,953 + ABI39_RS00570 0.16 +0.9
158,959 + ABI39_RS00570 0.16 -0.3
158,978 + ABI39_RS00570 0.17 +0.4
158,979 - ABI39_RS00570 0.17 -0.3
159,060 + ABI39_RS00570 0.21 -0.3
159,158 - ABI39_RS00570 0.26 +0.2
159,158 - ABI39_RS00570 0.26 +0.4
159,160 - ABI39_RS00570 0.26 -0.0
159,175 + ABI39_RS00570 0.27 +0.5
159,182 - ABI39_RS00570 0.28 +0.1
159,206 - ABI39_RS00570 0.29 -0.2
159,422 - ABI39_RS00570 0.40 +0.2
159,477 + ABI39_RS00570 0.43 -0.8
159,584 - ABI39_RS00570 0.48 +0.1
159,586 - ABI39_RS00570 0.48 +1.1
159,610 - ABI39_RS00570 0.50 -0.4
159,683 - ABI39_RS00570 0.53 -0.6
159,809 - ABI39_RS00570 0.60 -1.1
159,840 + ABI39_RS00570 0.62 +0.1
159,841 - ABI39_RS00570 0.62 +0.7
159,908 + ABI39_RS00570 0.65 +0.2
160,087 + ABI39_RS00570 0.74 +0.6
160,155 - ABI39_RS00570 0.78 +1.6
160,200 + ABI39_RS00570 0.80 -0.0
160,201 - ABI39_RS00570 0.80 +0.7
160,207 + ABI39_RS00570 0.80 -0.0
160,207 + ABI39_RS00570 0.80 +0.3
160,207 + ABI39_RS00570 0.80 +0.6
160,208 - ABI39_RS00570 0.80 -0.3
160,284 + ABI39_RS00570 0.84 -0.1
160,288 + ABI39_RS00570 0.85 -0.8
160,288 + ABI39_RS00570 0.85 -0.9
160,419 + +0.2
160,565 + +0.9
160,607 + +0.9
160,752 + +1.7
160,753 - -0.5
160,853 + -0.2
160,853 + +0.4
160,915 - +1.0
161,002 + ABI39_RS00575 0.10 +0.8
161,110 + ABI39_RS00575 0.14 +0.0
161,162 - ABI39_RS00575 0.16 +0.4
161,301 - ABI39_RS00575 0.21 -0.0
161,327 - ABI39_RS00575 0.22 +1.5
161,355 + ABI39_RS00575 0.23 +0.6
161,356 - ABI39_RS00575 0.24 +0.4
161,459 - ABI39_RS00575 0.27 -0.3
161,473 + ABI39_RS00575 0.28 +1.3
161,477 + ABI39_RS00575 0.28 -1.5
161,533 - ABI39_RS00575 0.30 -0.2

Or see this region's nucleotide sequence