Experiment: Dextrin from potato starch; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS20555 and ABI39_RS20560 overlap by 4 nucleotides ABI39_RS20560 and ABI39_RS20565 are separated by 11 nucleotides
ABI39_RS20555: ABI39_RS20555 - glycosyltransferase family 4 protein, at 5,069,248 to 5,070,399
_RS20555
ABI39_RS20560: ABI39_RS20560 - glycosyltransferase family 1 protein, at 5,070,396 to 5,071,529
_RS20560
ABI39_RS20565: ABI39_RS20565 - glycosyltransferase, at 5,071,541 to 5,072,689
_RS20565
Position (kb) 5070
5071
5072 Strain fitness (log2 ratio) -1
0
1
2 at 5069.469 kb on - strand, within ABI39_RS20555 at 5069.487 kb on + strand, within ABI39_RS20555 at 5069.487 kb on + strand, within ABI39_RS20555 at 5069.498 kb on - strand, within ABI39_RS20555 at 5069.630 kb on + strand, within ABI39_RS20555 at 5069.684 kb on - strand, within ABI39_RS20555 at 5070.019 kb on - strand, within ABI39_RS20555 at 5070.088 kb on + strand, within ABI39_RS20555 at 5070.219 kb on - strand, within ABI39_RS20555 at 5070.380 kb on + strand at 5070.499 kb on + strand at 5070.633 kb on + strand, within ABI39_RS20560 at 5070.667 kb on + strand, within ABI39_RS20560 at 5070.668 kb on - strand, within ABI39_RS20560 at 5070.668 kb on - strand, within ABI39_RS20560 at 5070.755 kb on + strand, within ABI39_RS20560 at 5070.759 kb on + strand, within ABI39_RS20560 at 5070.985 kb on + strand, within ABI39_RS20560 at 5070.986 kb on - strand, within ABI39_RS20560 at 5070.988 kb on + strand, within ABI39_RS20560 at 5071.050 kb on + strand, within ABI39_RS20560 at 5071.100 kb on + strand, within ABI39_RS20560 at 5071.100 kb on + strand, within ABI39_RS20560 at 5071.312 kb on - strand, within ABI39_RS20560 at 5071.328 kb on - strand, within ABI39_RS20560 at 5071.376 kb on + strand, within ABI39_RS20560 at 5071.376 kb on + strand, within ABI39_RS20560 at 5071.377 kb on - strand, within ABI39_RS20560 at 5071.434 kb on + strand at 5071.435 kb on - strand at 5071.650 kb on - strand at 5071.650 kb on - strand at 5071.728 kb on + strand, within ABI39_RS20565 at 5071.728 kb on + strand, within ABI39_RS20565 at 5071.797 kb on + strand, within ABI39_RS20565 at 5071.921 kb on - strand, within ABI39_RS20565 at 5071.921 kb on - strand, within ABI39_RS20565 at 5072.176 kb on + strand, within ABI39_RS20565 at 5072.251 kb on - strand, within ABI39_RS20565 at 5072.251 kb on - strand, within ABI39_RS20565 at 5072.251 kb on - strand, within ABI39_RS20565 at 5072.256 kb on + strand, within ABI39_RS20565 at 5072.257 kb on - strand, within ABI39_RS20565 at 5072.258 kb on + strand, within ABI39_RS20565 at 5072.259 kb on - strand, within ABI39_RS20565 at 5072.290 kb on - strand, within ABI39_RS20565 at 5072.354 kb on - strand, within ABI39_RS20565 at 5072.415 kb on + strand, within ABI39_RS20565
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch; autoclaved 2.5 mg/ml (C) remove 5,069,469 - ABI39_RS20555 0.19 +0.3 5,069,487 + ABI39_RS20555 0.21 -0.3 5,069,487 + ABI39_RS20555 0.21 -0.8 5,069,498 - ABI39_RS20555 0.22 +1.0 5,069,630 + ABI39_RS20555 0.33 +0.2 5,069,684 - ABI39_RS20555 0.38 -0.4 5,070,019 - ABI39_RS20555 0.67 +1.9 5,070,088 + ABI39_RS20555 0.73 -0.5 5,070,219 - ABI39_RS20555 0.84 +0.2 5,070,380 + +0.1 5,070,499 + -0.1 5,070,633 + ABI39_RS20560 0.21 +0.2 5,070,667 + ABI39_RS20560 0.24 -1.4 5,070,668 - ABI39_RS20560 0.24 -0.7 5,070,668 - ABI39_RS20560 0.24 +0.6 5,070,755 + ABI39_RS20560 0.32 +0.6 5,070,759 + ABI39_RS20560 0.32 +0.7 5,070,985 + ABI39_RS20560 0.52 +0.3 5,070,986 - ABI39_RS20560 0.52 -1.5 5,070,988 + ABI39_RS20560 0.52 +0.3 5,071,050 + ABI39_RS20560 0.58 -0.1 5,071,100 + ABI39_RS20560 0.62 +0.5 5,071,100 + ABI39_RS20560 0.62 +0.3 5,071,312 - ABI39_RS20560 0.81 -0.2 5,071,328 - ABI39_RS20560 0.82 +0.4 5,071,376 + ABI39_RS20560 0.86 -0.1 5,071,376 + ABI39_RS20560 0.86 -0.3 5,071,377 - ABI39_RS20560 0.87 -1.5 5,071,434 + +1.4 5,071,435 - +0.3 5,071,650 - -0.5 5,071,650 - -0.1 5,071,728 + ABI39_RS20565 0.16 -0.4 5,071,728 + ABI39_RS20565 0.16 +0.7 5,071,797 + ABI39_RS20565 0.22 -0.2 5,071,921 - ABI39_RS20565 0.33 -0.2 5,071,921 - ABI39_RS20565 0.33 +0.0 5,072,176 + ABI39_RS20565 0.55 +0.9 5,072,251 - ABI39_RS20565 0.62 -0.8 5,072,251 - ABI39_RS20565 0.62 -0.0 5,072,251 - ABI39_RS20565 0.62 +0.3 5,072,256 + ABI39_RS20565 0.62 +0.2 5,072,257 - ABI39_RS20565 0.62 -1.0 5,072,258 + ABI39_RS20565 0.62 -0.2 5,072,259 - ABI39_RS20565 0.62 -1.5 5,072,290 - ABI39_RS20565 0.65 +0.4 5,072,354 - ABI39_RS20565 0.71 -0.9 5,072,415 + ABI39_RS20565 0.76 -0.1
Or see this region's nucleotide sequence