Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS05855

Experiment: Dextrin from potato starch; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS05845 and ABI39_RS05850 are separated by 98 nucleotidesABI39_RS05850 and ABI39_RS05855 are separated by 181 nucleotidesABI39_RS05855 and ABI39_RS05860 are separated by 93 nucleotides ABI39_RS05845: ABI39_RS05845 - sulfate permease, at 1,613,608 to 1,615,290 _RS05845 ABI39_RS05850: ABI39_RS05850 - DUF4884 domain-containing protein, at 1,615,389 to 1,615,658 _RS05850 ABI39_RS05855: ABI39_RS05855 - rubrerythrin family protein, at 1,615,840 to 1,616,418 _RS05855 ABI39_RS05860: ABI39_RS05860 - response regulator, at 1,616,512 to 1,620,498 _RS05860 Position (kb) 1615 1616 1617Strain fitness (log2 ratio) -1 0 1 2at 1614.894 kb on + strand, within ABI39_RS05845at 1615.032 kb on - strand, within ABI39_RS05845at 1615.035 kb on + strand, within ABI39_RS05845at 1615.036 kb on - strand, within ABI39_RS05845at 1615.039 kb on + strand, within ABI39_RS05845at 1615.088 kb on - strand, within ABI39_RS05845at 1615.101 kb on + strand, within ABI39_RS05845at 1615.111 kb on + strand, within ABI39_RS05845at 1615.111 kb on + strand, within ABI39_RS05845at 1615.175 kb on - strandat 1615.305 kb on - strandat 1615.309 kb on + strandat 1615.381 kb on + strandat 1615.412 kb on + strandat 1615.455 kb on + strand, within ABI39_RS05850at 1615.498 kb on + strand, within ABI39_RS05850at 1615.509 kb on + strand, within ABI39_RS05850at 1615.510 kb on - strand, within ABI39_RS05850at 1615.611 kb on + strand, within ABI39_RS05850at 1615.824 kb on - strandat 1615.840 kb on - strandat 1615.923 kb on + strand, within ABI39_RS05855at 1615.927 kb on + strand, within ABI39_RS05855at 1616.020 kb on - strand, within ABI39_RS05855at 1616.199 kb on + strand, within ABI39_RS05855at 1616.199 kb on + strand, within ABI39_RS05855at 1616.200 kb on - strand, within ABI39_RS05855at 1616.200 kb on - strand, within ABI39_RS05855at 1616.245 kb on + strand, within ABI39_RS05855at 1616.335 kb on + strand, within ABI39_RS05855at 1616.344 kb on - strand, within ABI39_RS05855at 1616.360 kb on + strand, within ABI39_RS05855at 1616.389 kb on + strandat 1616.489 kb on - strandat 1616.719 kb on - strandat 1616.749 kb on - strandat 1616.975 kb on + strand, within ABI39_RS05860at 1616.976 kb on - strand, within ABI39_RS05860at 1617.019 kb on - strand, within ABI39_RS05860at 1617.050 kb on - strand, within ABI39_RS05860at 1617.061 kb on - strand, within ABI39_RS05860at 1617.061 kb on - strand, within ABI39_RS05860at 1617.173 kb on - strand, within ABI39_RS05860at 1617.194 kb on - strand, within ABI39_RS05860at 1617.194 kb on - strand, within ABI39_RS05860at 1617.200 kb on + strand, within ABI39_RS05860at 1617.274 kb on - strand, within ABI39_RS05860

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch; autoclaved 2.5 mg/ml (C)
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1,614,894 + ABI39_RS05845 0.76 +0.6
1,615,032 - ABI39_RS05845 0.85 -0.0
1,615,035 + ABI39_RS05845 0.85 -0.1
1,615,036 - ABI39_RS05845 0.85 -1.1
1,615,039 + ABI39_RS05845 0.85 -0.1
1,615,088 - ABI39_RS05845 0.88 -1.1
1,615,101 + ABI39_RS05845 0.89 -0.1
1,615,111 + ABI39_RS05845 0.89 +0.6
1,615,111 + ABI39_RS05845 0.89 +0.4
1,615,175 - -0.3
1,615,305 - -0.5
1,615,309 + +0.0
1,615,381 + +0.6
1,615,412 + +0.4
1,615,455 + ABI39_RS05850 0.24 +0.2
1,615,498 + ABI39_RS05850 0.40 -0.1
1,615,509 + ABI39_RS05850 0.44 -0.8
1,615,510 - ABI39_RS05850 0.45 -0.1
1,615,611 + ABI39_RS05850 0.82 +0.4
1,615,824 - +1.5
1,615,840 - +1.4
1,615,923 + ABI39_RS05855 0.14 +1.4
1,615,927 + ABI39_RS05855 0.15 +1.2
1,616,020 - ABI39_RS05855 0.31 +1.3
1,616,199 + ABI39_RS05855 0.62 +1.3
1,616,199 + ABI39_RS05855 0.62 +1.5
1,616,200 - ABI39_RS05855 0.62 +1.6
1,616,200 - ABI39_RS05855 0.62 +1.2
1,616,245 + ABI39_RS05855 0.70 +1.8
1,616,335 + ABI39_RS05855 0.85 +0.8
1,616,344 - ABI39_RS05855 0.87 +1.3
1,616,360 + ABI39_RS05855 0.90 +1.4
1,616,389 + +1.1
1,616,489 - -0.7
1,616,719 - -0.5
1,616,749 - -0.2
1,616,975 + ABI39_RS05860 0.12 -0.3
1,616,976 - ABI39_RS05860 0.12 +0.7
1,617,019 - ABI39_RS05860 0.13 +0.3
1,617,050 - ABI39_RS05860 0.13 +0.3
1,617,061 - ABI39_RS05860 0.14 -0.2
1,617,061 - ABI39_RS05860 0.14 -0.6
1,617,173 - ABI39_RS05860 0.17 -1.3
1,617,194 - ABI39_RS05860 0.17 -0.4
1,617,194 - ABI39_RS05860 0.17 +0.7
1,617,200 + ABI39_RS05860 0.17 +0.0
1,617,274 - ABI39_RS05860 0.19 -0.1

Or see this region's nucleotide sequence