Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS01285

Experiment: Dextrin from potato starch; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS01280 and ABI39_RS01285 are separated by 11 nucleotidesABI39_RS01285 and ABI39_RS01290 are separated by 49 nucleotides ABI39_RS01280: ABI39_RS01280 - efflux transporter outer membrane subunit, at 393,482 to 394,867 _RS01280 ABI39_RS01285: ABI39_RS01285 - efflux RND transporter permease subunit, at 394,879 to 398,097 _RS01285 ABI39_RS01290: ABI39_RS01290 - efflux RND transporter periplasmic adaptor subunit, at 398,147 to 399,358 _RS01290 Position (kb) 394 395 396 397 398 399Strain fitness (log2 ratio) -1 0 1at 393.982 kb on - strand, within ABI39_RS01280at 394.088 kb on + strand, within ABI39_RS01280at 394.344 kb on + strand, within ABI39_RS01280at 394.564 kb on - strand, within ABI39_RS01280at 394.631 kb on + strand, within ABI39_RS01280at 394.632 kb on - strand, within ABI39_RS01280at 394.721 kb on - strand, within ABI39_RS01280at 394.738 kb on + strandat 394.738 kb on + strandat 394.810 kb on - strandat 394.829 kb on + strandat 394.853 kb on + strandat 394.856 kb on + strandat 394.920 kb on + strandat 395.223 kb on + strand, within ABI39_RS01285at 395.278 kb on - strand, within ABI39_RS01285at 395.279 kb on + strand, within ABI39_RS01285at 395.279 kb on + strand, within ABI39_RS01285at 395.283 kb on + strand, within ABI39_RS01285at 395.284 kb on - strand, within ABI39_RS01285at 395.475 kb on + strand, within ABI39_RS01285at 395.496 kb on + strand, within ABI39_RS01285at 395.518 kb on - strand, within ABI39_RS01285at 395.599 kb on - strand, within ABI39_RS01285at 395.638 kb on - strand, within ABI39_RS01285at 395.638 kb on - strand, within ABI39_RS01285at 395.638 kb on - strand, within ABI39_RS01285at 395.760 kb on + strand, within ABI39_RS01285at 395.920 kb on - strand, within ABI39_RS01285at 395.920 kb on - strand, within ABI39_RS01285at 395.921 kb on + strand, within ABI39_RS01285at 395.991 kb on + strand, within ABI39_RS01285at 396.091 kb on - strand, within ABI39_RS01285at 396.109 kb on + strand, within ABI39_RS01285at 396.154 kb on - strand, within ABI39_RS01285at 396.154 kb on - strand, within ABI39_RS01285at 396.157 kb on + strand, within ABI39_RS01285at 396.214 kb on - strand, within ABI39_RS01285at 396.220 kb on - strand, within ABI39_RS01285at 396.220 kb on - strand, within ABI39_RS01285at 396.250 kb on - strand, within ABI39_RS01285at 396.529 kb on - strand, within ABI39_RS01285at 396.537 kb on - strand, within ABI39_RS01285at 396.621 kb on + strand, within ABI39_RS01285at 396.685 kb on - strand, within ABI39_RS01285at 396.769 kb on - strand, within ABI39_RS01285at 396.769 kb on - strand, within ABI39_RS01285at 396.810 kb on + strand, within ABI39_RS01285at 396.811 kb on - strand, within ABI39_RS01285at 396.811 kb on - strand, within ABI39_RS01285at 396.831 kb on + strand, within ABI39_RS01285at 396.832 kb on - strand, within ABI39_RS01285at 397.036 kb on - strand, within ABI39_RS01285at 397.036 kb on - strand, within ABI39_RS01285at 397.038 kb on - strand, within ABI39_RS01285at 397.039 kb on + strand, within ABI39_RS01285at 397.212 kb on + strand, within ABI39_RS01285at 397.216 kb on - strand, within ABI39_RS01285at 397.216 kb on - strand, within ABI39_RS01285at 397.216 kb on - strand, within ABI39_RS01285at 397.262 kb on - strand, within ABI39_RS01285at 397.407 kb on + strand, within ABI39_RS01285at 397.462 kb on - strand, within ABI39_RS01285at 397.545 kb on + strand, within ABI39_RS01285at 397.617 kb on + strand, within ABI39_RS01285at 397.647 kb on + strand, within ABI39_RS01285at 397.649 kb on + strand, within ABI39_RS01285at 397.758 kb on + strand, within ABI39_RS01285at 397.865 kb on + strandat 397.866 kb on - strandat 397.960 kb on + strandat 398.038 kb on + strandat 398.089 kb on + strandat 398.102 kb on + strandat 398.105 kb on - strandat 398.112 kb on - strandat 398.116 kb on - strandat 398.118 kb on - strandat 398.168 kb on - strandat 398.203 kb on - strandat 398.316 kb on + strand, within ABI39_RS01290at 398.369 kb on - strand, within ABI39_RS01290at 398.453 kb on - strand, within ABI39_RS01290at 398.453 kb on - strand, within ABI39_RS01290at 398.455 kb on + strand, within ABI39_RS01290at 398.456 kb on - strand, within ABI39_RS01290at 398.531 kb on + strand, within ABI39_RS01290at 398.590 kb on + strand, within ABI39_RS01290at 398.707 kb on - strand, within ABI39_RS01290at 398.773 kb on + strand, within ABI39_RS01290at 398.795 kb on - strand, within ABI39_RS01290at 398.837 kb on + strand, within ABI39_RS01290at 398.938 kb on + strand, within ABI39_RS01290at 399.048 kb on + strand, within ABI39_RS01290at 399.055 kb on + strand, within ABI39_RS01290

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch; autoclaved 2.5 mg/ml (C)
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393,982 - ABI39_RS01280 0.36 +1.3
394,088 + ABI39_RS01280 0.44 -0.7
394,344 + ABI39_RS01280 0.62 -1.3
394,564 - ABI39_RS01280 0.78 -0.3
394,631 + ABI39_RS01280 0.83 +0.2
394,632 - ABI39_RS01280 0.83 +0.6
394,721 - ABI39_RS01280 0.89 -0.2
394,738 + -0.0
394,738 + +0.7
394,810 - -0.7
394,829 + +0.1
394,853 + -1.0
394,856 + -0.7
394,920 + +1.6
395,223 + ABI39_RS01285 0.11 +0.0
395,278 - ABI39_RS01285 0.12 -0.3
395,279 + ABI39_RS01285 0.12 -0.4
395,279 + ABI39_RS01285 0.12 +0.7
395,283 + ABI39_RS01285 0.13 +1.3
395,284 - ABI39_RS01285 0.13 -0.3
395,475 + ABI39_RS01285 0.19 -1.2
395,496 + ABI39_RS01285 0.19 -0.4
395,518 - ABI39_RS01285 0.20 +0.0
395,599 - ABI39_RS01285 0.22 +1.6
395,638 - ABI39_RS01285 0.24 +0.6
395,638 - ABI39_RS01285 0.24 -0.2
395,638 - ABI39_RS01285 0.24 -0.1
395,760 + ABI39_RS01285 0.27 -0.6
395,920 - ABI39_RS01285 0.32 -0.2
395,920 - ABI39_RS01285 0.32 -0.5
395,921 + ABI39_RS01285 0.32 -0.4
395,991 + ABI39_RS01285 0.35 +0.6
396,091 - ABI39_RS01285 0.38 -0.3
396,109 + ABI39_RS01285 0.38 -0.7
396,154 - ABI39_RS01285 0.40 +0.1
396,154 - ABI39_RS01285 0.40 +0.0
396,157 + ABI39_RS01285 0.40 +0.8
396,214 - ABI39_RS01285 0.41 +0.5
396,220 - ABI39_RS01285 0.42 -0.4
396,220 - ABI39_RS01285 0.42 +0.1
396,250 - ABI39_RS01285 0.43 +1.6
396,529 - ABI39_RS01285 0.51 +0.4
396,537 - ABI39_RS01285 0.52 +0.2
396,621 + ABI39_RS01285 0.54 -1.2
396,685 - ABI39_RS01285 0.56 +0.3
396,769 - ABI39_RS01285 0.59 -0.2
396,769 - ABI39_RS01285 0.59 +0.4
396,810 + ABI39_RS01285 0.60 +0.2
396,811 - ABI39_RS01285 0.60 -0.1
396,811 - ABI39_RS01285 0.60 +0.9
396,831 + ABI39_RS01285 0.61 -0.1
396,832 - ABI39_RS01285 0.61 -0.0
397,036 - ABI39_RS01285 0.67 +0.5
397,036 - ABI39_RS01285 0.67 +0.1
397,038 - ABI39_RS01285 0.67 -0.4
397,039 + ABI39_RS01285 0.67 -0.1
397,212 + ABI39_RS01285 0.72 -0.5
397,216 - ABI39_RS01285 0.73 +0.3
397,216 - ABI39_RS01285 0.73 +0.4
397,216 - ABI39_RS01285 0.73 -0.4
397,262 - ABI39_RS01285 0.74 +0.6
397,407 + ABI39_RS01285 0.79 +0.4
397,462 - ABI39_RS01285 0.80 +0.9
397,545 + ABI39_RS01285 0.83 -0.8
397,617 + ABI39_RS01285 0.85 -0.1
397,647 + ABI39_RS01285 0.86 -0.2
397,649 + ABI39_RS01285 0.86 -0.0
397,758 + ABI39_RS01285 0.89 +0.3
397,865 + +0.1
397,866 - +0.3
397,960 + -0.1
398,038 + +0.9
398,089 + -0.9
398,102 + +0.1
398,105 - -0.1
398,112 - +0.5
398,116 - -1.4
398,118 - +0.1
398,168 - -0.1
398,203 - -0.3
398,316 + ABI39_RS01290 0.14 +0.1
398,369 - ABI39_RS01290 0.18 -0.2
398,453 - ABI39_RS01290 0.25 +1.0
398,453 - ABI39_RS01290 0.25 -0.0
398,455 + ABI39_RS01290 0.25 -1.3
398,456 - ABI39_RS01290 0.25 +0.3
398,531 + ABI39_RS01290 0.32 +0.9
398,590 + ABI39_RS01290 0.37 -0.7
398,707 - ABI39_RS01290 0.46 -0.4
398,773 + ABI39_RS01290 0.52 +0.6
398,795 - ABI39_RS01290 0.53 -0.4
398,837 + ABI39_RS01290 0.57 -0.1
398,938 + ABI39_RS01290 0.65 +0.6
399,048 + ABI39_RS01290 0.74 -1.2
399,055 + ABI39_RS01290 0.75 -0.0

Or see this region's nucleotide sequence