Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS21050 and ABI39_RS21055 are separated by 12 nucleotides ABI39_RS21055 and ABI39_RS21060 are separated by 21 nucleotides ABI39_RS21060 and ABI39_RS21065 are separated by 38 nucleotides ABI39_RS21065 and ABI39_RS21070 are separated by 12 nucleotides
ABI39_RS21050: ABI39_RS21050 - anthranilate synthase component I family protein, at 5,183,147 to 5,184,547
_RS21050
ABI39_RS21055: ABI39_RS21055 - aminodeoxychorismate/anthranilate synthase component II, at 5,184,560 to 5,185,150
_RS21055
ABI39_RS21060: ABI39_RS21060 - anthranilate phosphoribosyltransferase, at 5,185,172 to 5,186,167
_RS21060
ABI39_RS21065: ABI39_RS21065 - indole-3-glycerol phosphate synthase TrpC, at 5,186,206 to 5,186,994
_RS21065
ABI39_RS21070: ABI39_RS21070 - phosphoribosylanthranilate isomerase, at 5,187,007 to 5,187,624
_RS21070
Position (kb) 5185
5186
5187 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 5184.174 kb on - strand, within ABI39_RS21050 at 5184.391 kb on + strand, within ABI39_RS21050 at 5184.584 kb on + strand at 5184.585 kb on - strand at 5184.761 kb on + strand, within ABI39_RS21055 at 5184.981 kb on + strand, within ABI39_RS21055 at 5185.164 kb on + strand at 5185.167 kb on + strand at 5185.262 kb on + strand at 5185.400 kb on - strand, within ABI39_RS21060 at 5185.404 kb on + strand, within ABI39_RS21060 at 5185.404 kb on + strand, within ABI39_RS21060 at 5185.408 kb on + strand, within ABI39_RS21060 at 5185.503 kb on - strand, within ABI39_RS21060 at 5185.503 kb on - strand, within ABI39_RS21060 at 5185.613 kb on + strand, within ABI39_RS21060 at 5185.614 kb on - strand, within ABI39_RS21060 at 5185.786 kb on - strand, within ABI39_RS21060 at 5185.819 kb on - strand, within ABI39_RS21060 at 5186.052 kb on + strand, within ABI39_RS21060 at 5186.169 kb on + strand at 5186.180 kb on + strand at 5186.202 kb on + strand at 5186.215 kb on - strand at 5186.215 kb on - strand at 5186.215 kb on - strand at 5186.326 kb on - strand, within ABI39_RS21065 at 5186.428 kb on - strand, within ABI39_RS21065 at 5186.576 kb on - strand, within ABI39_RS21065 at 5186.600 kb on + strand, within ABI39_RS21065 at 5186.601 kb on - strand, within ABI39_RS21065 at 5186.730 kb on + strand, within ABI39_RS21065 at 5186.730 kb on + strand, within ABI39_RS21065 at 5186.731 kb on - strand, within ABI39_RS21065 at 5186.993 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize; autoclaved 2.5 mg/ml (C) remove 5,184,174 - ABI39_RS21050 0.73 -3.7 5,184,391 + ABI39_RS21050 0.89 -2.7 5,184,584 + -3.9 5,184,585 - -4.7 5,184,761 + ABI39_RS21055 0.34 -3.1 5,184,981 + ABI39_RS21055 0.71 -1.3 5,185,164 + -1.7 5,185,167 + -0.6 5,185,262 + -3.9 5,185,400 - ABI39_RS21060 0.23 -4.3 5,185,404 + ABI39_RS21060 0.23 -4.9 5,185,404 + ABI39_RS21060 0.23 -5.5 5,185,408 + ABI39_RS21060 0.24 -5.3 5,185,503 - ABI39_RS21060 0.33 -1.7 5,185,503 - ABI39_RS21060 0.33 -3.6 5,185,613 + ABI39_RS21060 0.44 -4.5 5,185,614 - ABI39_RS21060 0.44 -3.7 5,185,786 - ABI39_RS21060 0.62 -4.2 5,185,819 - ABI39_RS21060 0.65 -4.6 5,186,052 + ABI39_RS21060 0.88 -1.9 5,186,169 + -1.9 5,186,180 + -0.0 5,186,202 + -1.2 5,186,215 - -3.1 5,186,215 - -3.9 5,186,215 - -2.8 5,186,326 - ABI39_RS21065 0.15 -3.6 5,186,428 - ABI39_RS21065 0.28 -3.8 5,186,576 - ABI39_RS21065 0.47 -4.9 5,186,600 + ABI39_RS21065 0.50 -5.2 5,186,601 - ABI39_RS21065 0.50 -4.2 5,186,730 + ABI39_RS21065 0.66 -5.5 5,186,730 + ABI39_RS21065 0.66 -3.9 5,186,731 - ABI39_RS21065 0.67 -3.6 5,186,993 - -2.7
Or see this region's nucleotide sequence