Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20250

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
5,001,217	+		ABI39_RS20240	0.75	-0.8
5,001,294	+		ABI39_RS20240	0.81	-1.6
5,001,447	+				+0.1
5,001,567	+				-0.5
5,001,573	+				-0.6
5,001,602	-				+0.3
5,001,671	+				+0.7
5,002,070	-				+0.3
5,002,103	-				+0.5
5,002,103	-				-1.0
5,002,126	+				-0.4
5,002,160	-				+1.4
5,002,188	+		ABI39_RS20250	0.18	+0.8
5,002,188	+		ABI39_RS20250	0.18	+0.4
5,002,255	-		ABI39_RS20250	0.49	-1.5
5,002,256	+		ABI39_RS20250	0.49	+0.4
5,002,256	+		ABI39_RS20250	0.49	-0.6
5,002,256	+		ABI39_RS20250	0.49	+1.1
5,002,256	+		ABI39_RS20250	0.49	-0.4
5,002,337	+		ABI39_RS20250	0.86	-0.6
5,002,338	-		ABI39_RS20250	0.86	-1.0
5,002,338	-		ABI39_RS20250	0.86	+2.1
5,002,338	-		ABI39_RS20250	0.86	+0.7
5,002,348	+				+0.6
5,002,350	+				-0.0
5,002,351	-				+1.0
5,002,351	-				-2.2
5,002,351	-				-0.1
5,002,368	+				+0.7
5,002,528	+		ABI39_RS20255	0.11	+0.7
5,002,756	+		ABI39_RS20255	0.39	+0.8
5,002,760	-		ABI39_RS20255	0.40	+1.1
5,002,820	-		ABI39_RS20255	0.47	+0.6
5,002,984	+		ABI39_RS20255	0.67	+0.3
5,003,032	-		ABI39_RS20255	0.73	-1.4
5,003,062	-		ABI39_RS20255	0.76	+1.0
5,003,180	-				+0.7
5,003,226	+				-1.7
5,003,235	+				+0.5
5,003,313	-				+0.5