Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS19920 and ABI39_RS19925 are separated by 41 nucleotides ABI39_RS19925 and ABI39_RS19930 are separated by 9 nucleotides ABI39_RS19930 and ABI39_RS19935 are separated by 165 nucleotides ABI39_RS19935 and ABI39_RS19940 are separated by 1 nucleotides
ABI39_RS19920: ABI39_RS19920 - imidazole glycerol phosphate synthase subunit HisH, at 4,925,622 to 4,926,212
_RS19920
ABI39_RS19925: ABI39_RS19925 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 4,926,254 to 4,926,973
_RS19925
ABI39_RS19930: ABI39_RS19930 - imidazole glycerol phosphate synthase subunit HisF, at 4,926,983 to 4,927,738
_RS19930
ABI39_RS19935: ABI39_RS19935 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 4,927,904 to 4,928,515
_RS19935
ABI39_RS19940: ABI39_RS19940 - ATP-binding cassette domain-containing protein, at 4,928,517 to 4,929,275
_RS19940
Position (kb) 4926
4927
4928 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4925.996 kb on - strand, within ABI39_RS19920 at 4926.046 kb on + strand, within ABI39_RS19920 at 4926.051 kb on - strand, within ABI39_RS19920 at 4926.058 kb on - strand, within ABI39_RS19920 at 4926.098 kb on + strand, within ABI39_RS19920 at 4926.099 kb on - strand, within ABI39_RS19920 at 4926.219 kb on - strand at 4926.223 kb on + strand at 4926.224 kb on - strand at 4926.225 kb on + strand at 4926.227 kb on + strand at 4926.229 kb on + strand at 4926.230 kb on - strand at 4926.233 kb on - strand at 4926.258 kb on + strand at 4926.264 kb on + strand at 4926.265 kb on - strand at 4926.339 kb on - strand, within ABI39_RS19925 at 4926.523 kb on - strand, within ABI39_RS19925 at 4926.724 kb on + strand, within ABI39_RS19925 at 4926.802 kb on - strand, within ABI39_RS19925 at 4926.858 kb on + strand, within ABI39_RS19925 at 4926.868 kb on - strand, within ABI39_RS19925 at 4927.002 kb on + strand at 4927.003 kb on - strand at 4927.060 kb on - strand, within ABI39_RS19930 at 4927.180 kb on - strand, within ABI39_RS19930 at 4927.285 kb on + strand, within ABI39_RS19930 at 4927.436 kb on + strand, within ABI39_RS19930 at 4927.437 kb on - strand, within ABI39_RS19930 at 4927.867 kb on + strand at 4927.881 kb on + strand at 4927.881 kb on + strand at 4927.881 kb on + strand at 4927.883 kb on + strand at 4927.950 kb on + strand at 4927.950 kb on + strand at 4927.990 kb on + strand, within ABI39_RS19935 at 4928.169 kb on + strand, within ABI39_RS19935 at 4928.239 kb on - strand, within ABI39_RS19935 at 4928.335 kb on - strand, within ABI39_RS19935 at 4928.372 kb on - strand, within ABI39_RS19935 at 4928.397 kb on - strand, within ABI39_RS19935 at 4928.415 kb on + strand, within ABI39_RS19935 at 4928.418 kb on - strand, within ABI39_RS19935 at 4928.418 kb on - strand, within ABI39_RS19935 at 4928.418 kb on - strand, within ABI39_RS19935 at 4928.430 kb on + strand, within ABI39_RS19935 at 4928.430 kb on + strand, within ABI39_RS19935 at 4928.431 kb on - strand, within ABI39_RS19935 at 4928.513 kb on + strand at 4928.544 kb on - strand at 4928.551 kb on + strand at 4928.553 kb on + strand at 4928.556 kb on - strand at 4928.572 kb on + strand at 4928.622 kb on + strand, within ABI39_RS19940
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize; autoclaved 2.5 mg/ml (C) remove 4,925,996 - ABI39_RS19920 0.63 -2.5 4,926,046 + ABI39_RS19920 0.72 -1.9 4,926,051 - ABI39_RS19920 0.73 -4.9 4,926,058 - ABI39_RS19920 0.74 -2.6 4,926,098 + ABI39_RS19920 0.81 -1.6 4,926,099 - ABI39_RS19920 0.81 -3.2 4,926,219 - -5.5 4,926,223 + +0.0 4,926,224 - -1.6 4,926,225 + -1.3 4,926,227 + +1.4 4,926,229 + +1.3 4,926,230 - -3.4 4,926,233 - -3.4 4,926,258 + -4.2 4,926,264 + -4.2 4,926,265 - -3.6 4,926,339 - ABI39_RS19925 0.12 -5.4 4,926,523 - ABI39_RS19925 0.37 -2.4 4,926,724 + ABI39_RS19925 0.65 -5.5 4,926,802 - ABI39_RS19925 0.76 -3.0 4,926,858 + ABI39_RS19925 0.84 -4.7 4,926,868 - ABI39_RS19925 0.85 -2.0 4,927,002 + -4.6 4,927,003 - -3.2 4,927,060 - ABI39_RS19930 0.10 -4.5 4,927,180 - ABI39_RS19930 0.26 -4.4 4,927,285 + ABI39_RS19930 0.40 -4.8 4,927,436 + ABI39_RS19930 0.60 -4.9 4,927,437 - ABI39_RS19930 0.60 -4.9 4,927,867 + -1.3 4,927,881 + +0.4 4,927,881 + +1.5 4,927,881 + +1.3 4,927,883 + -0.4 4,927,950 + -4.6 4,927,950 + -3.9 4,927,990 + ABI39_RS19935 0.14 -3.8 4,928,169 + ABI39_RS19935 0.43 -4.1 4,928,239 - ABI39_RS19935 0.55 -3.9 4,928,335 - ABI39_RS19935 0.70 -3.4 4,928,372 - ABI39_RS19935 0.76 -2.8 4,928,397 - ABI39_RS19935 0.81 -3.9 4,928,415 + ABI39_RS19935 0.83 -3.6 4,928,418 - ABI39_RS19935 0.84 -3.4 4,928,418 - ABI39_RS19935 0.84 -3.0 4,928,418 - ABI39_RS19935 0.84 -2.4 4,928,430 + ABI39_RS19935 0.86 -2.7 4,928,430 + ABI39_RS19935 0.86 -3.5 4,928,431 - ABI39_RS19935 0.86 -3.4 4,928,513 + +1.1 4,928,544 - +1.2 4,928,551 + -2.2 4,928,553 + -0.2 4,928,556 - -0.6 4,928,572 + -0.6 4,928,622 + ABI39_RS19940 0.14 +0.8
Or see this region's nucleotide sequence