Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS16955

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
4,297,339	+		ABI39_RS16945	0.82	-0.8
4,297,652	+		ABI39_RS16950	0.11	+0.5
4,297,721	+		ABI39_RS16950	0.21	-0.0
4,297,730	-		ABI39_RS16950	0.22	+0.6
4,297,730	-		ABI39_RS16950	0.22	+1.0
4,297,738	-		ABI39_RS16950	0.23	-2.6
4,297,746	-		ABI39_RS16950	0.25	+0.8
4,297,754	-		ABI39_RS16950	0.26	+1.4
4,297,962	-		ABI39_RS16950	0.57	+0.1
4,297,989	+		ABI39_RS16950	0.61	+1.0
4,298,005	+		ABI39_RS16950	0.63	+0.8
4,298,005	+		ABI39_RS16950	0.63	+0.4
4,298,097	-		ABI39_RS16950	0.77	-3.0
4,298,106	+		ABI39_RS16950	0.78	+0.7
4,298,145	+		ABI39_RS16950	0.84	+1.6
4,298,146	-		ABI39_RS16950	0.84	+1.3
4,298,197	+				-0.0
4,298,197	+				-0.2
4,298,207	-				-1.2
4,298,226	-				-0.8
4,298,345	+				-1.8
4,298,439	+				-1.8
4,298,657	+		ABI39_RS16955	0.23	-0.4
4,298,662	-		ABI39_RS16955	0.23	-0.2
4,298,742	+		ABI39_RS16955	0.29	-1.6
4,298,751	+		ABI39_RS16955	0.29	-0.3
4,298,768	+		ABI39_RS16955	0.31	+1.3
4,298,769	-		ABI39_RS16955	0.31	+1.5
4,298,985	-		ABI39_RS16955	0.45	+1.1
4,299,086	+		ABI39_RS16955	0.52	+0.9
4,299,087	-		ABI39_RS16955	0.52	+1.0
4,299,120	-		ABI39_RS16955	0.54	+1.2
4,299,344	+		ABI39_RS16955	0.70	-1.7
4,299,344	+		ABI39_RS16955	0.70	+0.8
4,299,378	-		ABI39_RS16955	0.72	-0.3
4,299,489	+		ABI39_RS16955	0.80	+1.0
4,299,531	+		ABI39_RS16955	0.82	+0.4
4,299,552	-		ABI39_RS16955	0.84	+0.3
4,299,554	+		ABI39_RS16955	0.84	-0.0
4,299,606	+		ABI39_RS16955	0.88	+4.5
4,299,607	-		ABI39_RS16955	0.88	+2.0
4,299,608	+		ABI39_RS16955	0.88	+2.3
4,299,609	-		ABI39_RS16955	0.88	-1.0
4,299,628	+		ABI39_RS16955	0.89	-1.0
4,299,628	+		ABI39_RS16955	0.89	+1.2
4,299,629	-		ABI39_RS16955	0.89	-1.7
4,299,630	+		ABI39_RS16955	0.89	+1.0
4,299,639	+		ABI39_RS16955	0.90	-0.7
4,299,782	+				+1.0
4,299,788	+				-0.9
4,299,810	+				+1.4
4,299,811	-				+0.6
4,299,823	-				+0.5
4,300,029	+		ABI39_RS16960	0.20	+0.3
4,300,055	+		ABI39_RS16960	0.23	-0.4
4,300,056	-		ABI39_RS16960	0.23	-0.1
4,300,084	-		ABI39_RS16960	0.25	+0.3
4,300,087	+		ABI39_RS16960	0.25	+1.3
4,300,087	+		ABI39_RS16960	0.25	-1.3
4,300,143	-		ABI39_RS16960	0.30	-0.3
4,300,166	+		ABI39_RS16960	0.32	+1.6
4,300,402	-		ABI39_RS16960	0.53	-0.9
4,300,551	+		ABI39_RS16960	0.66	+0.4
4,300,611	+		ABI39_RS16960	0.72	-1.6
4,300,616	+		ABI39_RS16960	0.72	-0.8
4,300,617	-		ABI39_RS16960	0.72	-0.3
4,300,621	-		ABI39_RS16960	0.73	+0.1
4,300,758	-		ABI39_RS16960	0.85	-1.6
4,300,764	+		ABI39_RS16960	0.85	+0.8
4,300,765	-		ABI39_RS16960	0.85	-0.2
4,300,775	-		ABI39_RS16960	0.86	-0.2