Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS16705

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
4,238,593	+				-0.2
4,238,660	+		ABI39_RS16700	0.15	-0.0
4,238,664	+		ABI39_RS16700	0.15	-2.0
4,238,674	+		ABI39_RS16700	0.16	-2.0
4,238,675	-		ABI39_RS16700	0.16	-0.0
4,238,867	-		ABI39_RS16700	0.35	-2.0
4,238,972	-		ABI39_RS16700	0.45	+0.8
4,239,086	-		ABI39_RS16700	0.56	-0.8
4,239,125	+		ABI39_RS16700	0.60	-0.0
4,239,343	-		ABI39_RS16700	0.81	-1.0
4,239,343	-		ABI39_RS16700	0.81	-0.6
4,239,347	-		ABI39_RS16700	0.81	-0.7
4,239,351	+		ABI39_RS16700	0.82	+1.0
4,239,419	-		ABI39_RS16700	0.88	-2.0
4,239,507	+				-0.0
4,239,566	-				+0.6
4,239,573	-				+1.8
4,239,744	+				-3.0
4,239,745	-				-1.3
4,239,862	+				-1.6
4,239,987	+				-0.0
4,239,991	-				-2.2
4,240,038	+		ABI39_RS16705	0.10	-1.2
4,240,080	+		ABI39_RS16705	0.11	-1.3
4,240,097	+		ABI39_RS16705	0.11	-1.9
4,240,098	-		ABI39_RS16705	0.11	-1.4
4,240,098	-		ABI39_RS16705	0.11	-0.6
4,240,102	-		ABI39_RS16705	0.11	-3.5
4,240,102	-		ABI39_RS16705	0.11	-1.5
4,240,140	+		ABI39_RS16705	0.12	-2.3
4,240,140	+		ABI39_RS16705	0.12	+2.0
4,240,144	+		ABI39_RS16705	0.12	-1.0
4,240,321	+		ABI39_RS16705	0.16	-1.4
4,240,415	-		ABI39_RS16705	0.19	-2.9
4,240,415	-		ABI39_RS16705	0.19	-1.8
4,240,421	+		ABI39_RS16705	0.19	-0.8
4,240,435	+		ABI39_RS16705	0.19	-1.4
4,240,443	-		ABI39_RS16705	0.19	-2.1
4,240,443	-		ABI39_RS16705	0.19	-1.8
4,240,446	+		ABI39_RS16705	0.19	-3.0
4,240,513	-		ABI39_RS16705	0.21	-1.0
4,240,704	+		ABI39_RS16705	0.25	+1.0
4,240,743	+		ABI39_RS16705	0.26	-3.5
4,240,745	+		ABI39_RS16705	0.26	-1.2
4,240,745	+		ABI39_RS16705	0.26	-3.2
4,240,745	+		ABI39_RS16705	0.26	-0.0
4,240,835	+		ABI39_RS16705	0.28	-1.2
4,240,836	-		ABI39_RS16705	0.28	-2.7
4,240,838	-		ABI39_RS16705	0.28	-2.3
4,240,838	-		ABI39_RS16705	0.28	-2.7
4,240,871	+		ABI39_RS16705	0.29	-2.5
4,240,957	+		ABI39_RS16705	0.31	-1.8
4,241,026	-		ABI39_RS16705	0.32	-0.9
4,241,026	-		ABI39_RS16705	0.32	-1.5
4,241,054	+		ABI39_RS16705	0.33	-1.0
4,241,134	+		ABI39_RS16705	0.35	+0.4
4,241,185	+		ABI39_RS16705	0.36	-2.3
4,241,198	-		ABI39_RS16705	0.36	-2.8
4,241,265	-		ABI39_RS16705	0.38	-1.3
4,241,345	-		ABI39_RS16705	0.39	-1.0
4,241,352	+		ABI39_RS16705	0.40	-0.8
4,241,353	-		ABI39_RS16705	0.40	-0.9
4,241,371	+		ABI39_RS16705	0.40	-2.6
4,241,372	-		ABI39_RS16705	0.40	-0.5
4,241,506	+		ABI39_RS16705	0.43	-2.9
4,241,510	+		ABI39_RS16705	0.43	-2.0
4,241,511	-		ABI39_RS16705	0.43	-2.4
4,241,578	+		ABI39_RS16705	0.45	-0.8
4,241,585	-		ABI39_RS16705	0.45	-3.0
4,241,588	+		ABI39_RS16705	0.45	-1.8
4,241,705	-		ABI39_RS16705	0.47	-0.4
4,241,727	+		ABI39_RS16705	0.48	-0.4
4,241,811	+		ABI39_RS16705	0.50	-2.2
4,241,862	+		ABI39_RS16705	0.51	-0.3
4,241,929	-		ABI39_RS16705	0.52	-1.0
4,241,955	-		ABI39_RS16705	0.53	-0.8
4,241,969	+		ABI39_RS16705	0.53	-1.0
4,241,995	+		ABI39_RS16705	0.54	-3.3
4,242,021	+		ABI39_RS16705	0.55	+0.4
4,242,035	-		ABI39_RS16705	0.55	-1.3
4,242,124	-		ABI39_RS16705	0.57	-1.1
4,242,222	-		ABI39_RS16705	0.59	-1.9
4,242,284	-		ABI39_RS16705	0.60	-2.7
4,242,440	+		ABI39_RS16705	0.64	-3.0
4,242,597	+		ABI39_RS16705	0.67	-1.8
4,242,598	-		ABI39_RS16705	0.67	-1.2
4,242,600	-		ABI39_RS16705	0.67	-1.8
4,242,602	-		ABI39_RS16705	0.68	-2.5
4,242,602	-		ABI39_RS16705	0.68	-1.8
4,242,672	-		ABI39_RS16705	0.69	-1.7
4,242,693	+		ABI39_RS16705	0.70	-1.0
4,242,695	+		ABI39_RS16705	0.70	-1.1
4,242,869	+		ABI39_RS16705	0.74	-0.6
4,242,870	-		ABI39_RS16705	0.74	-2.1
4,242,932	+		ABI39_RS16705	0.75	-1.2
4,243,038	-		ABI39_RS16705	0.77	-2.4
4,243,250	+		ABI39_RS16705	0.82	-2.5
4,243,251	-		ABI39_RS16705	0.82	-2.7
4,243,251	-		ABI39_RS16705	0.82	-1.0
4,243,256	-		ABI39_RS16705	0.82	-1.6
4,243,316	-		ABI39_RS16705	0.84	-1.2
4,243,560	+		ABI39_RS16705	0.89	-0.6
4,243,561	-		ABI39_RS16705	0.89	-3.0
4,243,561	-		ABI39_RS16705	0.89	-2.8
4,243,564	+		ABI39_RS16705	0.89	-0.7
4,243,565	+		ABI39_RS16705	0.89	-4.4
4,243,566	-		ABI39_RS16705	0.89	-2.0
4,243,953	-				-0.6
4,243,975	+				-1.6
4,244,005	+				-1.3
4,244,028	+				-2.0
4,244,055	-				+1.1
4,244,199	+		ABI39_RS16710	0.15	+1.0
4,244,338	+		ABI39_RS16710	0.40	+0.1
4,244,371	+		ABI39_RS16710	0.46	-1.8
4,244,420	-		ABI39_RS16710	0.54	+0.1
4,244,441	-		ABI39_RS16710	0.58	+0.7
4,244,559	+		ABI39_RS16710	0.79	+0.4
4,244,559	+		ABI39_RS16710	0.79	-0.3
4,244,583	-		ABI39_RS16710	0.83	-1.0
4,244,604	+		ABI39_RS16710	0.87	-1.0
4,244,605	-		ABI39_RS16710	0.87	+1.5
4,244,677	+				-0.7
4,244,677	+				-0.8
4,244,709	-				+1.0
4,244,760	+				-0.3
4,244,835	+				-0.0
4,244,839	+				+0.5
4,244,954	+				+0.9
4,244,955	-				+0.3