Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS14265

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
3,705,500	+		ABI39_RS14255	0.79	-2.0
3,705,503	-		ABI39_RS14255	0.80	-2.6
3,705,753	+		ABI39_RS14260	0.14	-3.2
3,705,753	+		ABI39_RS14260	0.14	-1.7
3,705,868	+		ABI39_RS14260	0.29	-3.3
3,705,869	-		ABI39_RS14260	0.29	-0.5
3,705,887	-		ABI39_RS14260	0.32	-2.7
3,706,036	+		ABI39_RS14260	0.51	-2.7
3,706,037	-		ABI39_RS14260	0.52	-2.7
3,706,072	+		ABI39_RS14260	0.56	-1.4
3,706,076	-		ABI39_RS14260	0.57	-2.3
3,706,170	+		ABI39_RS14260	0.69	-1.7
3,706,171	-		ABI39_RS14260	0.69	-2.7
3,706,175	+		ABI39_RS14260	0.70	-2.2
3,706,176	-		ABI39_RS14260	0.70	-2.7
3,706,365	-				-3.3
3,706,376	+				-2.5
3,706,431	-				-2.3
3,706,459	-				-3.2
3,706,484	-		ABI39_RS14265	0.10	-2.5
3,706,633	-		ABI39_RS14265	0.33	-2.0
3,706,819	+		ABI39_RS14265	0.62	-3.2
3,706,884	+		ABI39_RS14265	0.72	-2.7
3,706,890	-		ABI39_RS14265	0.73	-2.0
3,706,905	+		ABI39_RS14265	0.76	-2.1
3,706,943	-		ABI39_RS14265	0.82	-2.2
3,706,969	-		ABI39_RS14265	0.86	-4.0
3,706,986	+		ABI39_RS14265	0.88	-1.9
3,706,997	-				-1.5
3,707,010	+				-2.1
3,707,011	-				-2.7
3,707,179	+				-0.2
3,707,208	-				-0.7
3,707,260	+				+0.9
3,707,265	+				+0.3
3,707,265	+				+0.2
3,707,345	+				+0.7
3,707,346	-				-0.2
3,707,479	-		ABI39_RS14270	0.14	-2.7
3,707,534	+		ABI39_RS14270	0.16	-0.0
3,707,538	+		ABI39_RS14270	0.16	+0.3
3,707,538	+		ABI39_RS14270	0.16	+0.2
3,707,582	-		ABI39_RS14270	0.18	-1.7
3,707,795	-		ABI39_RS14270	0.28	+0.3
3,707,969	+		ABI39_RS14270	0.36	-1.0
3,707,969	+		ABI39_RS14270	0.36	+0.3