Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS12235

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
3,228,015	-				-0.3
3,228,035	+				+0.7
3,228,036	-				-3.7
3,228,094	+				+0.5
3,228,102	-				+1.0
3,228,126	-				+0.2
3,228,430	-		ABI39_RS12230	0.49	+0.5
3,228,436	+		ABI39_RS12230	0.50	+0.3
3,228,437	-		ABI39_RS12230	0.50	-0.8
3,228,489	+		ABI39_RS12230	0.57	+0.4
3,228,531	-		ABI39_RS12230	0.63	-1.9
3,228,569	+		ABI39_RS12230	0.69	+1.4
3,228,570	-		ABI39_RS12230	0.69	+0.3
3,228,746	+				+1.5
3,228,746	+				+1.3
3,228,852	+				+2.0
3,228,870	-				-1.7
3,228,934	-				-0.1
3,229,038	-				-1.0
3,229,161	+		ABI39_RS12235	0.29	-1.1
3,229,161	+		ABI39_RS12235	0.29	-0.8
3,229,186	-		ABI39_RS12235	0.33	-1.2
3,229,343	+		ABI39_RS12235	0.61	-2.4
3,229,368	+		ABI39_RS12235	0.65	-1.5
3,229,462	+		ABI39_RS12235	0.82	-2.9
3,229,482	+		ABI39_RS12235	0.85	-2.6
3,229,485	+		ABI39_RS12235	0.86	-2.2
3,229,525	-				-2.2
3,229,637	+				-0.8
3,229,638	-				+0.0
3,229,638	-				-0.2
3,229,685	+				+0.3
3,229,806	+		ABI39_RS12240	0.33	-0.4
3,229,806	+		ABI39_RS12240	0.33	+0.0
3,229,845	+		ABI39_RS12240	0.42	-0.9
3,229,976	+		ABI39_RS12240	0.72	-0.6
3,229,991	+		ABI39_RS12240	0.75	+1.6
3,230,005	+		ABI39_RS12240	0.78	-0.8
3,230,154	-				-0.6
3,230,183	-				+0.9
3,230,296	-				+1.1
3,230,329	+				+0.2
3,230,329	+				-0.0
3,230,329	+				+0.3
3,230,331	+				-1.4
3,230,332	-				+0.2
3,230,334	-				+0.6
3,230,334	-				-0.1
3,230,422	-		ABI39_RS12245	0.12	+1.0
3,230,426	-		ABI39_RS12245	0.12	-3.6
3,230,548	-		ABI39_RS12245	0.22	+1.0
3,230,552	+		ABI39_RS12245	0.23	+0.5