Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS12015

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
3,178,428	+		ABI39_RS12010	0.12	-1.8
3,178,429	-		ABI39_RS12010	0.12	+0.6
3,178,429	-		ABI39_RS12010	0.12	-0.8
3,178,540	-		ABI39_RS12010	0.22	+0.5
3,178,540	-		ABI39_RS12010	0.22	+2.2
3,178,553	+		ABI39_RS12010	0.23	-0.7
3,178,567	-		ABI39_RS12010	0.25	+1.5
3,178,623	-		ABI39_RS12010	0.30	-0.2
3,178,677	-		ABI39_RS12010	0.35	-0.1
3,178,716	-		ABI39_RS12010	0.38	+3.4
3,178,718	-		ABI39_RS12010	0.38	-2.2
3,178,740	-		ABI39_RS12010	0.40	-0.2
3,178,825	+		ABI39_RS12010	0.48	-2.2
3,178,833	-		ABI39_RS12010	0.49	-0.2
3,178,860	-		ABI39_RS12010	0.51	-1.8
3,179,012	+		ABI39_RS12010	0.65	-1.2
3,179,054	+		ABI39_RS12010	0.69	-2.4
3,179,055	-		ABI39_RS12010	0.69	-0.1
3,179,099	+		ABI39_RS12010	0.73	-3.0
3,179,135	-		ABI39_RS12010	0.76	+0.1
3,179,135	-		ABI39_RS12010	0.76	-0.9
3,179,166	-		ABI39_RS12010	0.79	-1.2
3,179,180	+		ABI39_RS12010	0.81	+1.8
3,179,180	+		ABI39_RS12010	0.81	-2.5
3,179,191	+		ABI39_RS12010	0.82	-1.9
3,179,196	-		ABI39_RS12010	0.82	+0.1
3,179,209	+		ABI39_RS12010	0.83	-3.5
3,179,231	+		ABI39_RS12010	0.85	-0.9
3,179,236	+		ABI39_RS12010	0.86	-2.6
3,179,309	+				-2.9
3,179,357	-				-0.5
3,179,392	-				+0.2
3,179,411	-				-1.8
3,179,417	+				-2.7
3,179,484	+				-0.2
3,179,532	-		ABI39_RS12015	0.15	-0.3
3,179,561	+		ABI39_RS12015	0.18	-1.8
3,179,598	-		ABI39_RS12015	0.22	+1.6
3,179,657	+		ABI39_RS12015	0.28	-3.8
3,179,751	+		ABI39_RS12015	0.38	-2.2
3,179,752	-		ABI39_RS12015	0.38	+0.2
3,179,752	-		ABI39_RS12015	0.38	+0.1
3,179,819	+		ABI39_RS12015	0.45	-3.0
3,179,876	-		ABI39_RS12015	0.52	+0.8
3,179,911	+		ABI39_RS12015	0.55	-2.1
3,179,933	+		ABI39_RS12015	0.58	-4.3
3,179,940	+		ABI39_RS12015	0.58	-3.3
3,179,971	+		ABI39_RS12015	0.62	-0.8
3,180,017	+		ABI39_RS12015	0.67	-3.5
3,180,018	-		ABI39_RS12015	0.67	-0.5
3,180,148	+		ABI39_RS12015	0.81	-3.2
3,180,162	+		ABI39_RS12015	0.82	-1.5
3,180,163	-		ABI39_RS12015	0.82	+0.8
3,180,163	-		ABI39_RS12015	0.82	-0.5
3,180,164	+		ABI39_RS12015	0.82	-2.9
3,180,164	+		ABI39_RS12015	0.82	-3.8
3,180,165	-		ABI39_RS12015	0.83	+0.2
3,180,257	-				-0.9
3,180,260	+				-2.8
3,180,260	+				-3.8
3,180,267	-				+0.6
3,180,325	-				+0.1
3,180,327	+				-4.2
3,180,335	+				-1.9
3,180,344	-				-0.4
3,180,344	-				+0.3
3,180,368	-				-0.1
3,180,388	-				+1.0
3,180,400	-				-0.6
3,180,412	+				+0.3
3,180,463	-		ABI39_RS12020	0.14	-2.2
3,180,493	-		ABI39_RS12020	0.17	+0.6
3,180,493	-		ABI39_RS12020	0.17	+0.1
3,180,500	-		ABI39_RS12020	0.18	-0.6
3,180,515	-		ABI39_RS12020	0.19	-0.2
3,180,537	-		ABI39_RS12020	0.22	-0.6
3,180,571	+		ABI39_RS12020	0.25	-0.1
3,180,579	+		ABI39_RS12020	0.26	-3.0
3,180,657	+		ABI39_RS12020	0.35	-1.9
3,180,658	-		ABI39_RS12020	0.35	-0.3
3,180,694	+		ABI39_RS12020	0.39	-2.2
3,180,760	-		ABI39_RS12020	0.46	+0.3
3,180,761	-		ABI39_RS12020	0.46	-1.5
3,180,764	+		ABI39_RS12020	0.46	+0.3
3,180,964	+		ABI39_RS12020	0.68	+0.6
3,180,967	+		ABI39_RS12020	0.68	-3.2
3,181,046	+		ABI39_RS12020	0.77	+0.2
3,181,100	-		ABI39_RS12020	0.82	+0.2
3,181,127	+		ABI39_RS12020	0.85	-1.7
3,181,127	+		ABI39_RS12020	0.85	-1.1
3,181,196	-				-1.4
3,181,197	+				-0.5
3,181,197	+				-2.7
3,181,209	+				-2.7
3,181,212	-				-0.1