Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS11840

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
3,135,974	-		ABI39_RS11835	0.41	-2.2
3,135,982	+		ABI39_RS11835	0.42	-2.2
3,136,016	+		ABI39_RS11835	0.44	-3.6
3,136,043	+		ABI39_RS11835	0.47	-3.4
3,136,077	+		ABI39_RS11835	0.49	-3.6
3,136,124	-		ABI39_RS11835	0.53	-4.4
3,136,127	+		ABI39_RS11835	0.53	-0.2
3,136,437	+		ABI39_RS11835	0.77	-3.3
3,136,437	+		ABI39_RS11835	0.77	-2.5
3,136,545	-		ABI39_RS11835	0.86	-3.9
3,136,804	+				-2.7
3,136,856	-		ABI39_RS11840	0.12	-4.0
3,136,862	-		ABI39_RS11840	0.13	-3.0
3,136,981	-		ABI39_RS11840	0.24	-4.0
3,137,036	+		ABI39_RS11840	0.29	-2.2
3,137,074	-		ABI39_RS11840	0.33	-0.2
3,137,253	+		ABI39_RS11840	0.50	-3.6
3,137,313	-		ABI39_RS11840	0.56	-3.3
3,137,408	-		ABI39_RS11840	0.65	-2.2
3,137,486	+		ABI39_RS11840	0.73	-0.2
3,137,643	+		ABI39_RS11840	0.88	-1.2
3,137,734	+				-3.2
3,137,734	+				-0.2
3,137,793	+				-3.2
3,137,793	+				-2.7
3,137,878	-				-2.5
3,137,878	-				-0.2
3,137,998	-		ABI39_RS11845	0.20	-3.7
3,138,025	+		ABI39_RS11845	0.22	-0.2
3,138,041	-		ABI39_RS11845	0.24	-4.3
3,138,048	+		ABI39_RS11845	0.24	-1.7
3,138,049	-		ABI39_RS11845	0.25	-5.1
3,138,113	+		ABI39_RS11845	0.30	-2.2
3,138,128	+		ABI39_RS11845	0.32	-2.2
3,138,199	+		ABI39_RS11845	0.38	-3.5
3,138,199	+		ABI39_RS11845	0.38	-3.9
3,138,200	-		ABI39_RS11845	0.38	-3.5
3,138,200	-		ABI39_RS11845	0.38	-4.5
3,138,200	-		ABI39_RS11845	0.38	-2.2
3,138,221	-		ABI39_RS11845	0.40	-2.5
3,138,221	-		ABI39_RS11845	0.40	-2.5
3,138,410	-		ABI39_RS11845	0.57	-2.7
3,138,466	+		ABI39_RS11845	0.62	-3.3
3,138,508	+		ABI39_RS11845	0.66	-0.2
3,138,508	+		ABI39_RS11845	0.66	-1.2
3,138,548	+		ABI39_RS11845	0.69	-1.2
3,138,749	-		ABI39_RS11845	0.87	-3.3