Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS10110

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
2,698,772	-				-1.1
2,698,794	-				-1.1
2,698,796	-				+0.4
2,698,910	+		ABI39_RS10105	0.11	+0.5
2,698,940	-		ABI39_RS10105	0.15	+0.1
2,699,135	-		ABI39_RS10105	0.38	+0.8
2,699,586	+				+0.5
2,699,586	+				+0.5
2,699,587	-				-1.4
2,699,592	-				+1.0
2,699,607	-				+0.6
2,699,676	-				+0.8
2,699,684	-				-0.1
2,699,701	-				+1.0
2,699,701	-				+1.6
2,699,806	+				-2.7
2,699,814	+				-3.5
2,699,855	+				-3.0
2,699,916	+				-2.2
2,699,917	-				-1.2
2,700,052	-		ABI39_RS10110	0.13	-4.1
2,700,139	+		ABI39_RS10110	0.17	-2.2
2,700,145	-		ABI39_RS10110	0.17	-0.9
2,700,150	-		ABI39_RS10110	0.18	-4.1
2,700,174	+		ABI39_RS10110	0.19	-2.7
2,700,174	+		ABI39_RS10110	0.19	-3.2
2,700,197	+		ABI39_RS10110	0.20	-2.5
2,700,202	+		ABI39_RS10110	0.20	-2.2
2,700,202	+		ABI39_RS10110	0.20	-2.6
2,700,316	+		ABI39_RS10110	0.25	-3.4
2,700,348	+		ABI39_RS10110	0.27	-3.2
2,700,351	-		ABI39_RS10110	0.27	-2.2
2,700,429	-		ABI39_RS10110	0.30	-2.2
2,700,525	+		ABI39_RS10110	0.35	+0.8
2,700,583	-		ABI39_RS10110	0.37	-1.5
2,700,586	+		ABI39_RS10110	0.37	-2.8
2,700,699	+		ABI39_RS10110	0.42	-2.2
2,700,890	+		ABI39_RS10110	0.51	-0.4
2,700,897	-		ABI39_RS10110	0.51	-1.2
2,700,908	+		ABI39_RS10110	0.52	-2.5
2,701,004	-		ABI39_RS10110	0.56	-2.8
2,701,178	-		ABI39_RS10110	0.64	-0.2
2,701,178	-		ABI39_RS10110	0.64	-2.7
2,701,189	-		ABI39_RS10110	0.65	-2.2
2,701,236	-		ABI39_RS10110	0.67	-1.4
2,701,242	-		ABI39_RS10110	0.67	-3.7
2,701,284	+		ABI39_RS10110	0.69	-1.2
2,701,308	-		ABI39_RS10110	0.70	-3.9
2,701,311	+		ABI39_RS10110	0.70	-2.9
2,701,312	-		ABI39_RS10110	0.70	-5.1
2,701,315	+		ABI39_RS10110	0.70	-4.8
2,701,316	-		ABI39_RS10110	0.70	-3.5
2,701,427	+		ABI39_RS10110	0.76	-1.2
2,701,483	+		ABI39_RS10110	0.78	-2.5
2,701,720	-		ABI39_RS10110	0.89	-3.5
2,701,739	-		ABI39_RS10110	0.90	-4.3
2,701,955	-				-5.1
2,701,968	+				-3.7
2,702,028	-				-0.0
2,702,081	-				-0.5
2,702,311	-		ABI39_RS10115	0.28	-2.1
2,702,325	-		ABI39_RS10115	0.29	-0.1
2,702,335	-		ABI39_RS10115	0.31	+1.4
2,702,364	+		ABI39_RS10115	0.34	-0.3
2,702,395	+		ABI39_RS10115	0.37	-0.4
2,702,407	+		ABI39_RS10115	0.38	+0.4
2,702,482	+		ABI39_RS10115	0.46	+0.1
2,702,505	-		ABI39_RS10115	0.49	-1.1
2,702,544	-		ABI39_RS10115	0.53	+0.1
2,702,544	-		ABI39_RS10115	0.53	+0.1
2,702,687	+		ABI39_RS10115	0.69	-0.2
2,702,692	+		ABI39_RS10115	0.69	+1.7
2,702,708	-		ABI39_RS10115	0.71	-0.0
2,702,714	+		ABI39_RS10115	0.71	+0.0
2,702,742	+		ABI39_RS10115	0.74	-0.4
2,702,775	-		ABI39_RS10115	0.78	+0.1
2,702,797	+		ABI39_RS10115	0.80	-0.6
2,702,808	+		ABI39_RS10115	0.82	-0.5
2,702,809	-		ABI39_RS10115	0.82	+0.1