Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS09665

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
2,596,334	-				-0.9
2,596,404	-				+0.0
2,596,471	+		ABI39_RS09660	0.26	+0.7
2,596,495	+		ABI39_RS09660	0.32	+0.5
2,596,495	+		ABI39_RS09660	0.32	-0.6
2,596,503	+		ABI39_RS09660	0.34	-2.5
2,596,503	+		ABI39_RS09660	0.34	+0.3
2,596,504	-		ABI39_RS09660	0.35	+1.0
2,596,504	-		ABI39_RS09660	0.35	+1.1
2,596,507	+		ABI39_RS09660	0.35	+1.3
2,596,525	+		ABI39_RS09660	0.40	-0.3
2,596,588	+		ABI39_RS09660	0.55	+0.5
2,596,619	+		ABI39_RS09660	0.63	-1.0
2,596,622	+		ABI39_RS09660	0.64	+0.2
2,596,629	+		ABI39_RS09660	0.65	+1.5
2,596,630	-		ABI39_RS09660	0.66	+0.3
2,596,648	-		ABI39_RS09660	0.70	+0.6
2,596,648	-		ABI39_RS09660	0.70	-0.1
2,596,649	+		ABI39_RS09660	0.70	+0.2
2,596,650	-		ABI39_RS09660	0.71	+1.3
2,596,650	-		ABI39_RS09660	0.71	-0.6
2,596,650	-		ABI39_RS09660	0.71	+0.8
2,596,694	+		ABI39_RS09660	0.81	-1.1
2,596,694	+		ABI39_RS09660	0.81	-1.5
2,596,694	+		ABI39_RS09660	0.81	+0.3
2,596,695	-		ABI39_RS09660	0.82	-0.5
2,596,695	-		ABI39_RS09660	0.82	+1.1
2,596,705	+		ABI39_RS09660	0.84	-0.9
2,596,711	+		ABI39_RS09660	0.86	+1.1
2,596,759	+				+0.2
2,596,766	+				+0.3
2,596,825	+				-1.2
2,596,858	-				+1.8
2,596,875	+				+1.2
2,596,876	-				+1.4
2,596,879	+				+1.5
2,596,954	+				-0.0
2,596,980	+				-0.6
2,597,016	+				+1.4
2,597,043	+				+1.8
2,597,072	+				+0.7
2,597,094	+				-1.5
2,597,104	+				+1.9
2,597,182	+		ABI39_RS09665	0.12	+1.9
2,597,204	-		ABI39_RS09665	0.12	-3.0
2,597,242	+		ABI39_RS09665	0.14	+1.8
2,597,243	-		ABI39_RS09665	0.14	+1.3
2,597,329	-		ABI39_RS09665	0.17	+1.6
2,597,378	-		ABI39_RS09665	0.18	+1.0
2,597,798	-		ABI39_RS09665	0.33	-0.1
2,597,814	-		ABI39_RS09665	0.33	+1.5
2,597,969	-		ABI39_RS09665	0.39	+0.3
2,598,094	-		ABI39_RS09665	0.43	+1.1
2,598,094	-		ABI39_RS09665	0.43	+1.9
2,598,186	+		ABI39_RS09665	0.46	+1.6
2,598,227	-		ABI39_RS09665	0.48	+2.0
2,598,311	+		ABI39_RS09665	0.51	+0.4
2,598,312	-		ABI39_RS09665	0.51	-1.8
2,598,347	+		ABI39_RS09665	0.52	+1.4
2,598,348	-		ABI39_RS09665	0.52	+1.7
2,598,364	+		ABI39_RS09665	0.52	+1.3
2,598,373	-		ABI39_RS09665	0.53	+2.2
2,598,377	+		ABI39_RS09665	0.53	+0.9
2,598,377	+		ABI39_RS09665	0.53	+1.3
2,598,379	+		ABI39_RS09665	0.53	+0.9
2,598,391	+		ABI39_RS09665	0.53	+1.6
2,598,396	-		ABI39_RS09665	0.54	+1.7
2,598,396	-		ABI39_RS09665	0.54	-0.4
2,598,397	+		ABI39_RS09665	0.54	+1.3
2,598,398	-		ABI39_RS09665	0.54	-0.3
2,598,406	+		ABI39_RS09665	0.54	+1.0
2,598,407	-		ABI39_RS09665	0.54	+1.7
2,598,440	-		ABI39_RS09665	0.55	+1.2
2,598,451	+		ABI39_RS09665	0.55	+1.9
2,598,480	-		ABI39_RS09665	0.56	+1.8
2,598,540	-		ABI39_RS09665	0.59	+1.0
2,598,543	+		ABI39_RS09665	0.59	+0.2
2,598,569	+		ABI39_RS09665	0.60	+0.9
2,598,676	+		ABI39_RS09665	0.63	+1.4
2,598,689	+		ABI39_RS09665	0.64	+1.6
2,598,783	-		ABI39_RS09665	0.67	+1.7
2,598,793	+		ABI39_RS09665	0.67	+2.6
2,598,913	+		ABI39_RS09665	0.71	+0.6
2,598,920	+		ABI39_RS09665	0.72	+1.5
2,598,920	+		ABI39_RS09665	0.72	+0.2
2,598,921	-		ABI39_RS09665	0.72	-0.1
2,598,921	-		ABI39_RS09665	0.72	+2.5
2,598,989	-		ABI39_RS09665	0.74	+0.1
2,598,992	-		ABI39_RS09665	0.74	-0.0
2,599,001	+		ABI39_RS09665	0.74	+1.7
2,599,002	-		ABI39_RS09665	0.74	+1.3
2,599,002	-		ABI39_RS09665	0.74	+0.9
2,599,042	+		ABI39_RS09665	0.76	+1.7
2,599,187	-		ABI39_RS09665	0.81	+0.7
2,599,330	+		ABI39_RS09665	0.86	+0.5
2,599,541	-				+1.4
2,599,598	-				+2.0
2,599,601	+				+1.9
2,599,602	-				-1.2
2,599,619	-				+0.3
2,599,619	-				-1.5
2,599,623	-				-0.5
2,599,645	+				+1.2
2,599,645	+				+0.5
2,599,772	+				+0.7
2,599,817	+				-0.1
2,599,850	-				-1.2
2,599,912	+				-1.2
2,600,248	+		ABI39_RS09670	0.29	+2.3
2,600,329	-		ABI39_RS09670	0.34	+0.2
2,600,501	-		ABI39_RS09670	0.46	+1.1