Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS08915

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
2,368,209	-		ABI39_RS08910	0.73	+1.4
2,368,211	+		ABI39_RS08910	0.73	-0.1
2,368,213	+		ABI39_RS08910	0.73	+0.5
2,368,214	-		ABI39_RS08910	0.73	+0.9
2,368,218	+		ABI39_RS08910	0.73	+1.2
2,368,265	+		ABI39_RS08910	0.74	+0.5
2,368,286	+		ABI39_RS08910	0.75	+1.0
2,368,290	+		ABI39_RS08910	0.75	+0.6
2,368,462	+		ABI39_RS08910	0.80	+1.2
2,368,462	+		ABI39_RS08910	0.80	-0.9
2,368,463	-		ABI39_RS08910	0.80	-2.8
2,368,511	+		ABI39_RS08910	0.81	+1.3
2,368,512	-		ABI39_RS08910	0.81	+1.2
2,368,517	+		ABI39_RS08910	0.82	+1.1
2,368,616	-		ABI39_RS08910	0.84	-0.7
2,368,622	+		ABI39_RS08910	0.84	-0.5
2,368,626	+		ABI39_RS08910	0.85	-0.6
2,368,627	-		ABI39_RS08910	0.85	+0.0
2,368,628	+		ABI39_RS08910	0.85	+1.3
2,368,643	+		ABI39_RS08910	0.85	-1.9
2,368,674	+		ABI39_RS08910	0.86	-0.2
2,368,737	-		ABI39_RS08910	0.88	+1.7
2,368,762	+		ABI39_RS08910	0.88	-0.4
2,368,788	+		ABI39_RS08910	0.89	+0.3
2,368,800	-		ABI39_RS08910	0.89	+0.9
2,368,865	+				+2.0
2,368,912	-				-0.2
2,369,010	-				+1.6
2,369,053	+				-0.7
2,369,079	-				-1.5
2,369,080	+				+0.9
2,369,080	+				+1.5
2,369,080	+				+0.5
2,369,080	+				+0.2
2,369,107	-				+0.3
2,369,171	-				+0.3
2,369,171	-				+0.7
2,369,179	+				+1.2
2,369,202	+				-0.4
2,369,202	+				+0.3
2,369,203	-				-1.8
2,369,218	+				+0.6
2,369,312	+				+1.1
2,369,313	-				-1.9
2,369,401	+		ABI39_RS08915	0.11	-1.7
2,369,401	+		ABI39_RS08915	0.11	+0.1
2,369,567	-		ABI39_RS08915	0.19	-0.9
2,369,584	+		ABI39_RS08915	0.20	-1.6
2,369,600	+		ABI39_RS08915	0.20	+1.2
2,369,601	-		ABI39_RS08915	0.21	+0.1
2,369,647	+		ABI39_RS08915	0.23	-0.2
2,369,681	+		ABI39_RS08915	0.24	-1.6
2,369,686	+		ABI39_RS08915	0.25	-0.3
2,369,713	-		ABI39_RS08915	0.26	-0.2
2,369,726	-		ABI39_RS08915	0.27	+0.5
2,369,849	+		ABI39_RS08915	0.33	-0.8
2,369,863	+		ABI39_RS08915	0.33	-0.9
2,369,888	-		ABI39_RS08915	0.35	+0.9
2,369,920	+		ABI39_RS08915	0.36	-0.2
2,369,921	-		ABI39_RS08915	0.36	+0.2
2,369,946	+		ABI39_RS08915	0.38	+0.3
2,370,181	-		ABI39_RS08915	0.49	-1.0
2,370,217	+		ABI39_RS08915	0.51	+1.8
2,370,273	+		ABI39_RS08915	0.54	-1.8
2,370,273	+		ABI39_RS08915	0.54	-0.6
2,370,284	-		ABI39_RS08915	0.54	+0.8
2,370,289	+		ABI39_RS08915	0.55	-0.6
2,370,373	+		ABI39_RS08915	0.59	+0.6
2,370,383	-		ABI39_RS08915	0.59	+0.0
2,370,412	+		ABI39_RS08915	0.61	+0.5
2,370,412	+		ABI39_RS08915	0.61	-1.3
2,370,412	+		ABI39_RS08915	0.61	+1.0
2,370,456	-		ABI39_RS08915	0.63	+0.2
2,370,598	-		ABI39_RS08915	0.70	-0.6
2,370,644	-		ABI39_RS08915	0.72	+1.4
2,370,644	-		ABI39_RS08915	0.72	+0.1
2,370,647	+		ABI39_RS08915	0.72	-1.4
2,370,648	-		ABI39_RS08915	0.72	+0.9
2,370,733	+		ABI39_RS08915	0.77	+0.2
2,370,738	+		ABI39_RS08915	0.77	+1.0
2,370,741	+		ABI39_RS08915	0.77	-0.5
2,370,754	+		ABI39_RS08915	0.78	-0.2
2,370,795	+		ABI39_RS08915	0.80	-0.4
2,370,965	+		ABI39_RS08915	0.88	-0.3
2,371,221	+				+0.4
2,371,232	-				+0.5
2,371,384	+				-1.0
2,371,385	-				-1.6
2,371,466	+				-4.3
2,371,650	-		ABI39_RS08920	0.13	+0.8
2,371,657	-		ABI39_RS08920	0.13	-0.5
2,371,657	-		ABI39_RS08920	0.13	-0.9
2,371,904	+		ABI39_RS08920	0.24	-2.1
2,371,904	+		ABI39_RS08920	0.24	+0.3
2,371,904	+		ABI39_RS08920	0.24	-0.2
2,371,932	+		ABI39_RS08920	0.25	-1.0
2,371,942	-		ABI39_RS08920	0.26	-1.9
2,371,957	-		ABI39_RS08920	0.26	-0.5
2,371,961	+		ABI39_RS08920	0.27	+0.1
2,371,983	-		ABI39_RS08920	0.28	+0.9
2,371,983	-		ABI39_RS08920	0.28	-0.8
2,372,015	+		ABI39_RS08920	0.29	-1.3
2,372,016	-		ABI39_RS08920	0.29	+1.5
2,372,153	+		ABI39_RS08920	0.35	-1.2
2,372,159	-		ABI39_RS08920	0.35	-0.6
2,372,188	+		ABI39_RS08920	0.37	+0.5
2,372,189	-		ABI39_RS08920	0.37	+0.2
2,372,193	-		ABI39_RS08920	0.37	+1.2