Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04505

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
1,268,024	+				+0.1
1,268,214	+		ABI39_RS04500	0.15	+0.6
1,268,214	+		ABI39_RS04500	0.15	-0.9
1,268,271	+		ABI39_RS04500	0.25	-0.0
1,268,303	-		ABI39_RS04500	0.31	-0.1
1,268,402	-		ABI39_RS04500	0.48	+0.6
1,268,457	-		ABI39_RS04500	0.57	-2.0
1,268,487	-		ABI39_RS04500	0.62	-0.7
1,268,614	-		ABI39_RS04500	0.84	-1.2
1,268,614	-		ABI39_RS04500	0.84	-0.1
1,269,113	-		ABI39_RS04505	0.20	-1.8
1,269,117	-		ABI39_RS04505	0.20	+0.1
1,269,129	+		ABI39_RS04505	0.21	-2.8
1,269,130	-		ABI39_RS04505	0.21	-3.1
1,269,334	+		ABI39_RS04505	0.35	-0.6
1,269,492	-		ABI39_RS04505	0.45	-3.6
1,269,576	-		ABI39_RS04505	0.51	-4.8
1,269,606	+		ABI39_RS04505	0.53	-2.4
1,269,725	-		ABI39_RS04505	0.61	-3.2
1,270,145	+		ABI39_RS04505	0.88	-2.7
1,270,266	-				-2.6
1,270,433	-				+0.5
1,270,614	-				-0.4
1,270,618	-				-0.9
1,270,618	-				-0.0
1,270,761	+				-0.4
1,270,901	-		ABI39_RS04510	0.13	+2.5
1,270,961	+		ABI39_RS04510	0.19	+0.3
1,270,987	+		ABI39_RS04510	0.22	+1.7
1,271,044	-		ABI39_RS04510	0.28	-0.2
1,271,055	-		ABI39_RS04510	0.29	+0.5
1,271,056	+		ABI39_RS04510	0.29	-0.7
1,271,061	+		ABI39_RS04510	0.30	+0.8
1,271,102	+		ABI39_RS04510	0.34	-0.5
1,271,156	+		ABI39_RS04510	0.39	-1.1
1,271,284	+		ABI39_RS04510	0.52	+1.5
1,271,288	+		ABI39_RS04510	0.53	+0.4